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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254663 (69 seq.)
>W1710865228
LMGM01000002
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
125665
125592
-
Val
TAC
[ENA]
¡û
>W1710866836
LMHU01000007
Actinomycetota
Terrabacter sp. Root181 [LMHU]
321193
321120
-
Val
TAC
[ENA]
¡û
>W1710868160
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
604807
604880
+
Val
TAC
[ENA]
¡û
>W1710879932
LMRZ01000004
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
766580
766653
+
Val
TAC
[ENA]
¡û
>W1710879977
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
51958
51885
-
Val
TAC
[ENA]
¡û
>W1710880091
LMSC01000009
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
69449
69376
-
Val
TAC
[ENA]
¡û
>W1710881159
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1110060
1110133
+
Val
TAC
[ENA]
¡û
>W1710881225
LMSX01000011
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
88676
88603
-
Val
TAC
[ENA]
¡û
>W1711138030
LVCF01000040
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
83807
83732
-
Val
TAC
[ENA]
¡û
>W131185559
ARTT01000018
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
17485
17558
+
Val
TAC
[ENA]
¡û
>W1711517423
MLJO01000010
Actinomycetota
Intrasporangium flavum flava [MLJO]
167660
167587
-
Val
TAC
[ENA]
¡û
>w012495
AAMN01000002
Actinomycetota
Janibacter sp. HTCC2649 [AAMN]
929445
929370
-
Val
TAC
[ENA]
¡û
>W141142503
AWQS01000219
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
4459
4386
-
Val
TAC
[ENA]
¡û
>W141143065
AWSA01000018
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
86220
86147
-
Val
TAC
[ENA]
¡û
>W141243008
CAJB01000212
Actinomycetota
Tetrasphaera japonica T1-X7 [CAJB]
24728
24653
-
Val
TAC
[ENA]
¡û
>WENV183710734
PDWI01052592
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2284
2209
-
Val
TAC
[ENA]
¢þ
>WENV183721665
PDWJ01079560
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
77
2
-
Val
TAC
[ENA]
¢þ
>C181196304
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
2039150
2039076
-
Val
TAC
-
¡û
>C181200516
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
1715702
1715775
+
Val
TAC
-
¡û
>C191147704
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
1060589
1060662
+
Val
TAC
-
¡û
>W141564810
JIBA01000018
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
212548
212475
-
Val
TAC
[ENA]
¡û
>W141765849
JODP01000009
Actinomycetota
Kineosporia aurantiaca JCM 3230 [JODP]
189441
189516
+
Val
TAC
[ENA]
¡û
>W141773516
JOIN01000001
Actinomycetota
Corynebacterium variabile [JOIN]
526025
525952
-
Val
TAC
[ENA]
¡û
>W1911533134
OKQN01000010
Actinomycetota
Janibacter massiliensis Marseille-P4121 [OKQN]
302102
302175
+
Val
TAC
[ENA]
¡û
>W1911584620
PIPF01000001
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
59539
59466
-
Val
TAC
[ENA]
¡û
>W1810364541
PVTI01000001
Actinomycetota
Knoellia remsis ATCC BAA-1496 [PVTI]
177103
177176
+
Val
TAC
[ENA]
¡û
>W1810594942
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
1621112
1621038
-
Val
TAC
[ENA]
¡û
>W1810701935
QMFW01000189
Actinomycetota
Janibacter anophelis TNDT5 [QMFW]
13004
13077
+
Val
TAC
[ENA]
¡û
>W1810861648
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
1956211
1956284
+
Val
TAC
[ENA]
¡û
>C151077113
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
2778839
2778912
+
Val
TAC
-
¡û
>W1510071719
CDGT01000023
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
583955
583882
-
Val
TAC
[ENA]
¡û
>C11111437
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
2302363
2302288
-
Val
TAC
[Ensembl]
¡û
>W1511534752
JYOE01000039
Actinomycetota
Terrabacter sp. 28 [JYOE]
17648
17721
+
Val
TAC
[ENA]
¡û
>W121124416
BAFE01000027
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
114633
114708
+
Val
TAC
[ENA]
¡û
>W121126433
BAGZ01000005
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
202605
202532
-
Val
TAC
[ENA]
¡û
>W1610027064
AVPI01000004
Actinomycetota
Knoellia flava TL1 [AVPI]
533
460
-
Val
TAC
[ENA]
¡û
>W1610027107
AVPJ01000001
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
60349
60276
-
Val
TAC
[ENA]
¡û
>W1610027152
AVPK01000001
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
51527
51454
-
Val
TAC
[ENA]
¡û
>W1610027194
AVPL01000004
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
24038
24111
+
Val
TAC
[ENA]
¡û
>W1610051952
BBHM01001010
Actinomycetota
Kineosporia aurantiaca JCM 3230 [BBHM]
1029
1104
+
Val
TAC
[ENA]
¡û
>W1610052797
BBIF01000180
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
4643
4718
+
Val
TAC
[ENA]
¡û
>W1610062577
BCNQ01000035
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
2423
2350
-
Val
TAC
[ENA]
¡û
>W1610069632
BCSQ01000041
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
14944
14871
-
Val
TAC
[ENA]
¡û
>W1610069698
BCSS01000004
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
66941
67014
+
Val
TAC
[ENA]
¡û
>W1610072287
BCUV01000003
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
266390
266463
+
Val
TAC
[ENA]
¡û
>W1610078162
BDAR01000009
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
265451
265524
+
Val
TAC
[ENA]
¡û
>W1610727574
LMGM01000002
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
125665
125592
-
Val
TAC
[ENA]
¡û
>W1610729182
LMHU01000007
Actinomycetota
Terrabacter sp. Root181 [LMHU]
321193
321120
-
Val
TAC
[ENA]
¡û
>W1610730506
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
604807
604880
+
Val
TAC
[ENA]
¡û
>W1610742278
LMRZ01000004
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
766580
766653
+
Val
TAC
[ENA]
¡û
>W1610742323
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
51958
51885
-
Val
TAC
[ENA]
¡û
>W1610742437
LMSC01000009
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
69449
69376
-
Val
TAC
[ENA]
¡û
>W1610743505
LMSW01000011
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
1110060
1110133
+
Val
TAC
[ENA]
¡û
>W1610743571
LMSX01000011
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
88676
88603
-
Val
TAC
[ENA]
¡û
>W1610949116
LVCF01000040
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
83807
83732
-
Val
TAC
[ENA]
¡û
>W1710023229
AVPI01000004
Actinomycetota
Knoellia flava TL1 [AVPI]
533
460
-
Val
TAC
[ENA]
¡û
>W1710023272
AVPJ01000001
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
60349
60276
-
Val
TAC
[ENA]
¡û
>W1710023317
AVPK01000001
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
51527
51454
-
Val
TAC
[ENA]
¡û
>W1710023359
AVPL01000004
Actinomycetota
Knoellia aerolata DSM 18566 [AVPL]
24038
24111
+
Val
TAC
[ENA]
¡û
>W1710048330
BBHM01001010
Actinomycetota
Kineosporia aurantiaca JCM 3230 [BBHM]
1029
1104
+
Val
TAC
[ENA]
¡û
>W1710049175
BBIF01000180
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
4643
4718
+
Val
TAC
[ENA]
¡û
>W1710060053
BCNQ01000035
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
2423
2350
-
Val
TAC
[ENA]
¡û
>W1710067005
BCSQ01000041
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
14944
14871
-
Val
TAC
[ENA]
¡û
>W1710067071
BCSS01000004
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
66941
67014
+
Val
TAC
[ENA]
¡û
>W1710069489
BCUV01000003
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
266390
266463
+
Val
TAC
[ENA]
¡û
>W1710076721
BDAR01000009
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
265451
265524
+
Val
TAC
[ENA]
¡û
>W1710552750
FOHB01000003
Actinomycetota
Pedococcus cremeus [FOHB]
491316
491389
+
Val
TAC
[ENA]
¡û
>W1710555158
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
1189665
1189592
-
Val
TAC
[ENA]
¡û
>W1710606097
FWXN01000007
Actinomycetota
Janibacter indicus [FWXN]
46927
46854
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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