This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254781 (37 seq.)
>W1711411775
MGTN01000091
Thermodesulfobacteriota
Desulfovibrionales bacterium GWA2_65_9 [MGTN]
4294
4219
-
Phe
GAA
[ENA]
¡û
>W1711510645
MLBG01000105
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
5307
5232
-
Phe
GAA
[ENA]
¡û
>W1711581853
MNUQ01000094
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CG1_02_65_16 [MNUQ]
20897
20822
-
Phe
GAA
[ENA]
¡û
>C007544
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
3514674
3514749
+
Phe
GAA
[Ensembl]
¡û
>C008048
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
169323
169398
+
Phe
GAA
[Ensembl]
¡û
>C008149
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
3422970
3422895
-
Phe
GAA
[Ensembl]
¡û
>WENV180276596
OBHU01046113
[OBHU] human gut metagenome; feces
86
161
+
Phe
GAA
[ENA]
¢þ
>W141027992
ALAO01000184
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
18611
18536
-
Phe
GAA
[ENA]
¡û
>WENV180534583
OCHM01019995
[OCHM] human gut metagenome; human gut
26
101
+
Phe
GAA
[ENA]
¢þ
>WENV180547805
OCIU01115669
[OCIU] human gut metagenome; human gut
308
383
+
Phe
GAA
[ENA]
¢þ
>WENV181256675
OFFT01017138
[OFFT] mouse gut metagenome; faeces
1218
1293
+
Phe
GAA
[ENA]
¢þ
>WENV181271134
OFGF01007686
[OFGF] mouse gut metagenome; faeces
637
562
-
Phe
GAA
[ENA]
¢þ
>WENV181539981
OGIA01001445
[OGIA] metagenome; Human gut stool
8020
8095
+
Phe
GAA
[ENA]
¢þ
>WENV181578012
OGJY01000194
[OGJY] metagenome; Human gut stool
22181
22256
+
Phe
GAA
[ENA]
¢þ
>W141169757
AXWQ01000001
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
17993
17918
-
Phe
GAA
[ENA]
¡û
>WENV181903727
OGXX01002514
[OGXX] human gut metagenome; faeces
8423
8348
-
Phe
GAA
[ENA]
¢þ
>WENV181991366
OHAQ01001655
[OHAQ] human gut metagenome; faeces
3664
3739
+
Phe
GAA
[ENA]
¢þ
>WENV182012557
OHBM01042787
[OHBM] human gut metagenome; faeces
330
405
+
Phe
GAA
[ENA]
¢þ
>W141201104
AZAO01000008
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
34105
34030
-
Phe
GAA
[ENA]
¡û
>WENV182719776
OJPN01000795
[OJPN] human gut metagenome; stool sample
18450
18375
-
Phe
GAA
[ENA]
¢þ
>WENV182727668
OJPW01000067
[OJPW] human gut metagenome; stool sample
55647
55572
-
Phe
GAA
[ENA]
¢þ
>WENV183222660
OLQM01002389
[OLQM] human gut metagenome; faeces
4241
4316
+
Phe
GAA
[ENA]
¢þ
>WENV170002893
AGTN01161646
[AGTN] bioreactor metagenome; poplar biomass
100
175
+
Phe
GAA
[ENA]
¢þ
>WENV170069832
CDZQ01004688
[CDZQ] gut metagenome; human stools
14410
14335
-
Phe
GAA
[ENA]
¢þ
>C191045044
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
1062840
1062915
+
Phe
GAA
-
¡û
>W09100672
AABN02000001
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [AABN]
335029
334954
-
Phe
GAA
[ENA]
¡û
>W09106211
AATW01000002
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
215881
215956
+
Phe
GAA
[ENA]
¡û
>W09134082
ACQX01000017
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
48185
48110
-
Phe
GAA
[ENA]
¡û
>W1910020661
BDUJ01000002
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
171439
171514
+
Phe
GAA
[ENA]
¡û
>W1910182256
BJMT01000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
170572
170497
-
Phe
GAA
[ENA]
¡û
>W1910547842
FZOC01000003
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
277702
277777
+
Phe
GAA
[ENA]
¡û
>C09103872
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
390060
389985
-
Phe
GAA
[Ensembl]
¡û
>C09104116
AP010904
Thermodesulfobacteriota
Solidesulfovibrio magneticus RS-1 [AP010904]
3900101
3900026
-
Phe
GAA
[Ensembl]
¡û
>C09104404
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
3076869
3076794
-
Phe
GAA
[Ensembl]
¡û
>C11107457
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
3426112
3426037
-
Phe
GAA
[Ensembl]
¡û
>W1511365650
JSEH01000027
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
17677
17752
+
Phe
GAA
[ENA]
¡û
>W11178834
AGFG01000058
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
27289
27214
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK