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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254785 (23 seq.)
>W1711723494
MTPJ01000009
Thermodesulfobacteriota
Lawsonia intracellularis [MTPJ]
43546
43621
+
Gln
TTG
[ENA]
¡û
>C008064
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
1848102
1848177
+
Gln
TTG
[Ensembl]
¡û
>C008165
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
1658353
1658278
-
Gln
TTG
[Ensembl]
¡û
>C011813
AM180252
Thermodesulfobacteriota
Lawsonia intracellularis PHE/MN1-00 [AM180252]
920117
920192
+
Gln
TTG
[Ensembl]
¡û
>WENV181737426
OGQH01027325
[OGQH] human gut metagenome; faeces
965
890
-
Gln
TTG
[ENA]
¢þ
>WENV181909087
OGYB01009673
[OGYB] human gut metagenome; faeces
511
586
+
Gln
TTG
[ENA]
¢þ
>W141201061
AZAO01000003
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
270366
270441
+
Gln
TTG
[ENA]
¡û
>WENV182652991
OJMH01073214
[OJMH] human gut metagenome; feces
220
295
+
Gln
TTG
[ENA]
¢þ
>WENV182709633
OJPB01011959
[OJPB] human gut metagenome; stool sample
1143
1068
-
Gln
TTG
[ENA]
¢þ
>WENV183247607
OLRF01005480
[OLRF] human gut metagenome; faeces
1939
1864
-
Gln
TTG
[ENA]
¢þ
>WENV183712324
PDWI01095638
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
607
682
+
Gln
TTG
[ENA]
¢þ
>WENV183718282
PDWJ01003191
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
16387
16312
-
Gln
TTG
[ENA]
¢þ
>WENV183718483
PDWJ01004353
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3799
3874
+
Gln
TTG
[ENA]
¢þ
>WENV183719482
PDWJ01014888
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2131
2206
+
Gln
TTG
[ENA]
¢þ
>WENV170785978
MDSQ01087505
[MDSQ] gut metagenome; Hindgut content
1826
1901
+
Gln
TTG
[ENA]
¢þ
>W09106236
AATW01000008
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
76215
76290
+
Gln
TTG
[ENA]
¡û
>W09134051
ACQX01000001
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
427883
427958
+
Gln
TTG
[ENA]
¡û
>W1910182266
BJMT01000003
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
88351
88276
-
Gln
TTG
[ENA]
¡û
>W1810707509
QNHM01000001
Thermodesulfobacteriota
Lawsonia intracellularis Ib2/JPN [QNHM]
483772
483697
-
Gln
TTG
[ENA]
¡û
>W1810707540
QNHN01000001
Thermodesulfobacteriota
Lawsonia intracellularis Ni/JPN [QNHN]
243501
243576
+
Gln
TTG
[ENA]
¡û
>W1810707593
QNHO01000001
Thermodesulfobacteriota
Lawsonia intracellularis Fu/JPN [QNHO]
483750
483675
-
Gln
TTG
[ENA]
¡û
>C11107432
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
1924865
1924940
+
Gln
TTG
[Ensembl]
¡û
>C131011808
CP004029
Thermodesulfobacteriota
Lawsonia intracellularis N343 [CP004029]
920110
920185
+
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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