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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254890 (55 seq.)
>W1710900532
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
1397845
1397917
+
Lys
CTT
[ENA]
¡û
>W1710919546
LNXS01000021
Gammaproteobacteria
Legionella anisa [LNXS]
120439
120364
-
Lys
CTT
[ENA]
¡û
>W1710919639
LNXU01000032
Gammaproteobacteria
Legionella bozemanae [LNXU]
556235
556310
+
Lys
CTT
[ENA]
¡û
>W1710919715
LNXW01000013
Gammaproteobacteria
Legionella cherrii [LNXW]
1780495
1780420
-
Lys
CTT
[ENA]
¡û
>W1710919752
LNXX01000042
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
155496
155422
-
Lys
CTT
[ENA]
¡û
>W1710919830
LNXZ01000006
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [LNXZ]
1461431
1461356
-
Lys
CTT
[ENA]
¡û
>W1710919998
LNYD01000032
Gammaproteobacteria
Fluoribacter gormanii [LNYD]
139972
140048
+
Lys
CTT
[ENA]
¡û
>W1710920039
LNYE01000023
Gammaproteobacteria
Legionella gratiana [LNYE]
223718
223794
+
Lys
CTT
[ENA]
¡û
>W1710920507
LNYQ01000013
Gammaproteobacteria
Legionella parisiensis [LNYQ]
708698
708773
+
Lys
CTT
[ENA]
¡û
>W1710920654
LNYU01000003
Gammaproteobacteria
Legionella santicrucis [LNYU]
9350
9426
+
Lys
CTT
[ENA]
¡û
>W1710920696
LNYV01000001
Gammaproteobacteria
Legionella sainthelensi [LNYV]
66373
66299
-
Lys
CTT
[ENA]
¡û
>W1710920846
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
1661593
1661517
-
Lys
CTT
[ENA]
¡û
>W1710920865
LNYZ01000003
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
73256
73332
+
Lys
CTT
[ENA]
¡û
>W1710920918
LNZA01000001
Gammaproteobacteria
Legionella tucsonensis [LNZA]
2249520
2249445
-
Lys
CTT
[ENA]
¡û
>W1711079681
LSOG01000016
Gammaproteobacteria
Legionella parisiensis [LSOG]
624
549
-
Lys
CTT
[ENA]
¡û
>W1711503394
MKTO01000023
Gammaproteobacteria
Legionella sp. 39-23 [MKTO]
46334
46410
+
Lys
CTT
[ENA]
¡û
>W1711957277
NBTX01000001
Gammaproteobacteria
Legionella anisa [NBTX]
1301710
1301785
+
Lys
CTT
[ENA]
¡û
>C171106578
CP020412
Gammaproteobacteria
Legionella longbeachae FDAARGOS_201 [CP020412]
3855407
3855482
+
Lys
CTT
-
¡û
>C171114456
CP020894
Gammaproteobacteria
Legionella longbeachae F1157CHC [CP020894]
1333161
1333086
-
Lys
CTT
-
¡û
>W131242398
CANP01000027
Gammaproteobacteria
Legionella anisa str. Linanisette [CANP]
23168
23243
+
Lys
CTT
[ENA]
¡û
>C181117900
CP025491
Gammaproteobacteria
Legionella sainthelensi LA01-117 [CP025491]
3984680
3984605
-
Lys
CTT
-
¡û
>C191198873
LR134173
Gammaproteobacteria
Legionella cherrii NCTC11976 [LR134173]
3269561
3269489
-
Lys
CTT
-
¡û
>C191198975
LR134178
Gammaproteobacteria
Legionella sainthelensi NCTC12450 [LR134178]
2793682
2793608
-
Lys
CTT
-
¡û
>C191204113
LR134286
Gammaproteobacteria
Legionella oakridgensis NCTC11531 [LR134286]
2889517
2889442
-
Lys
CTT
-
¡û
>C191210098
LR134388
Gammaproteobacteria
Legionella sainthelensi NCTC11988 [LR134388]
1434563
1434637
+
Lys
CTT
-
¡û
>W141560455
JHXP01000016
Gammaproteobacteria
Legionella sainthelensi ATCC 35248 [JHXP]
65374
65300
-
Lys
CTT
[ENA]
¡û
>W141561489
JHYM01000005
Gammaproteobacteria
Legionella cherrii DSM 19213 [JHYM]
299101
299176
+
Lys
CTT
[ENA]
¡û
>W141730011
JNIA01000010
Gammaproteobacteria
Legionella wadsworthii DSM 21896 = ATCC 33877 [JNIA]
35652
35728
+
Lys
CTT
[ENA]
¡û
>W1810625315
QHJG01000038
Gammaproteobacteria
Legionella qingyii HEB18 [QHJG]
10854
10779
-
Lys
CTT
[ENA]
¡û
>C151103381
LN614827
Gammaproteobacteria
Legionella fallonii LLAP-10 [LN614827]
835302
835377
+
Lys
CTT
[Ensembl]
¡û
>W10107354
ACZG01000002
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
598262
598337
+
Lys
CTT
[ENA]
¡û
>C10108673
FN650140
Gammaproteobacteria
Legionella longbeachae NSW150 [FN650140]
2826701
2826626
-
Lys
CTT
[Ensembl]
¡û
>W11109643
ACZG01000002
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
598262
598337
+
Lys
CTT
[ENA]
¡û
>WENV058192
AACY023320678
Marine microbial communities from Global Ocean Sampling (GOS)
368
445
+
Lys
CTT
[ENA]
>W121021436
AGVT01000010
Gammaproteobacteria
Fluoribacter dumoffii Tex-KL [AGVT]
920176
920101
-
Lys
CTT
[ENA]
¡û
>W121021486
AGVU01000015
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [AGVU]
61821
61746
-
Lys
CTT
[ENA]
¡û
>W1610580105
LBAW01000090
Gammaproteobacteria
Legionella bozemanae [LBAW]
492
417
-
Lys
CTT
[ENA]
¡û
>W1610580166
LBAY01000018
Gammaproteobacteria
Fluoribacter gormanii [LBAY]
42794
42718
-
Lys
CTT
[ENA]
¡û
>W1610760519
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
1397845
1397917
+
Lys
CTT
[ENA]
¡û
>W1610777444
LNXS01000021
Gammaproteobacteria
Legionella anisa [LNXS]
120439
120364
-
Lys
CTT
[ENA]
¡û
>W1610777537
LNXU01000032
Gammaproteobacteria
Legionella bozemanae [LNXU]
556235
556310
+
Lys
CTT
[ENA]
¡û
>W1610777613
LNXW01000013
Gammaproteobacteria
Legionella cherrii [LNXW]
1780495
1780420
-
Lys
CTT
[ENA]
¡û
>W1610777650
LNXX01000042
Gammaproteobacteria
Legionella cincinnatiensis [LNXX]
155496
155422
-
Lys
CTT
[ENA]
¡û
>W1610777728
LNXZ01000006
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [LNXZ]
1461431
1461356
-
Lys
CTT
[ENA]
¡û
>W1610777896
LNYD01000032
Gammaproteobacteria
Fluoribacter gormanii [LNYD]
139972
140048
+
Lys
CTT
[ENA]
¡û
>W1610777937
LNYE01000023
Gammaproteobacteria
Legionella gratiana [LNYE]
223718
223794
+
Lys
CTT
[ENA]
¡û
>W1610778405
LNYQ01000013
Gammaproteobacteria
Legionella parisiensis [LNYQ]
708698
708773
+
Lys
CTT
[ENA]
¡û
>W1610778552
LNYU01000003
Gammaproteobacteria
Legionella santicrucis [LNYU]
9350
9426
+
Lys
CTT
[ENA]
¡û
>W1610778594
LNYV01000001
Gammaproteobacteria
Legionella sainthelensi [LNYV]
66373
66299
-
Lys
CTT
[ENA]
¡û
>W1610778744
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
1661593
1661517
-
Lys
CTT
[ENA]
¡û
>W1610778763
LNYZ01000003
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
73256
73332
+
Lys
CTT
[ENA]
¡û
>W1610778816
LNZA01000001
Gammaproteobacteria
Legionella tucsonensis [LNZA]
2249520
2249445
-
Lys
CTT
[ENA]
¡û
>W1710597837
FTNL01000008
Gammaproteobacteria
Fluoribacter gormanii [FTNL]
87055
87131
+
Lys
CTT
[ENA]
¡û
>W1710699117
LBAW01000090
Gammaproteobacteria
Legionella bozemanae [LBAW]
492
417
-
Lys
CTT
[ENA]
¡û
>W1710699178
LBAY01000018
Gammaproteobacteria
Fluoribacter gormanii [LBAY]
42794
42718
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK