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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254914 (38 seq.)
>W1711121919
LUID01000099
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [LUID]
2
77
+
Ala
TGC
[ENA]
¡û
>W1711513370
MLFQ01000648
Gammaproteobacteria
Mixta gaviniae [MLFQ]
129
54
-
Ala
TGC
[ENA]
¡û
>W131223509
AUCC01000136
Gammaproteobacteria
Arsenophonus nasoniae DSM 15247 [AUCC]
2462
2537
+
Ala
TGC
[ENA]
¡û
>C171130369
LT635893
Gammaproteobacteria
Buchnera aphidicola Bcipseudotaxifoliae [LT635893]
197643
197715
+
Ala
TGC
-
¡û
>C171130400
LT667500
Gammaproteobacteria
Buchnera aphidicola BCifornacula [LT667500]
195827
195899
+
Ala
TGC
-
¡û
>C001869
AE013218
Gammaproteobacteria
Buchnera aphidicola str. Sg [Schizaphis graminum] [AE013218]
277221
277293
+
Ala
TGC
[Ensembl]
¡û
>C004625
BA000003
Gammaproteobacteria
Buchnera aphidicola str. APS [Acyrthosiphon pisum] [BA000003]
275731
275803
+
Ala
TGC
[Ensembl]
¡û
>WENV170312062
CESM01216604
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1001
926
-
Ala
TGC
[ENA]
¢þ
>WENV170468850
CEVF01065976
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
215
140
-
Ala
TGC
[ENA]
¢þ
>WENV170469468
CEVF01118156
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
245
320
+
Ala
TGC
[ENA]
¢þ
>WENV170471877
CEVG01116920
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
210
285
+
Ala
TGC
[ENA]
¢þ
>WENV170563879
CZCB01033408
[CZCB] anaerobic digester metagenome; anaerobic digester
892
817
-
Ala
TGC
[ENA]
¢þ
>WENV170584875
FUFK010244518
[FUFK] metagenome; unknown
571
496
-
Ala
TGC
[ENA]
¢þ
>WENV170586906
FUFK010452760
[FUFK] metagenome; unknown
3
78
+
Ala
TGC
[ENA]
¢þ
>WENV170589131
FUFK010619433
[FUFK] metagenome; unknown
333
258
-
Ala
TGC
[ENA]
¢þ
>C181175417
CP029161
Gammaproteobacteria
Buchnera aphidicola [Melanaphis sacchari] LSU [CP029161]
351144
351070
-
Ala
TGC
-
¡û
>C181220973
LT897836
Gammaproteobacteria
Sodalis endosymbiont of Henestaris halophilus [LT897836]
577377
577302
-
Ala
TGC
-
¡û
>C191094400
CP032759
Gammaproteobacteria
Buchnera aphidicola [Rhopalosiphum maidis] BTI [CP032759]
502294
502220
-
Ala
TGC
-
¡û
>C191098065
CP033006
Gammaproteobacteria
Buchnera aphidicola [Macrosiphum euphorbiae] Meu [CP033006]
277805
277877
+
Ala
TGC
-
¡û
>C191132468
CP034861
Gammaproteobacteria
Buchnera aphidicola [Muscaphis stroyani] Mst [CP034861]
267220
267292
+
Ala
TGC
-
¡û
>C191132500
CP034867
Gammaproteobacteria
Buchnera aphidicola [Macrosiphum gaurae] Mga [CP034867]
277248
277322
+
Ala
TGC
-
¡û
>C191132596
CP034897
Gammaproteobacteria
Buchnera aphidicola [Aphis craccivora] Acr [CP034897]
274064
274138
+
Ala
TGC
-
¡û
>C191219979
LR217737
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipiceae [LR217737]
1042960
1042887
-
Ala
TGC
-
¡û
>W141557211
JHUZ01000004
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
3404
3329
-
Ala
TGC
[ENA]
¡û
>C09101319
CP001161
Gammaproteobacteria
Buchnera aphidicola str. 5A [Acyrthosiphon pisum] [CP001161]
276878
276952
+
Ala
TGC
[Ensembl]
¡û
>C09101351
CP001158
Gammaproteobacteria
Buchnera aphidicola str. Tuc7 [Acyrthosiphon pisum] [CP001158]
276887
276961
+
Ala
TGC
[Ensembl]
¡û
>W1911190139
NQWO01000043
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Blockley NCTR361 [NQWO]
71
146
+
Ala
TGC
[ENA]
¡û
>W1810779466
QQOH01000013
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
275
200
-
Ala
TGC
[ENA]
¡û
>C151003509
CP002697
Gammaproteobacteria
Buchnera aphidicola str. USDA [Myzus persicae] [CP002697]
277422
277496
+
Ala
TGC
[Ensembl]
¡û
>C151009205
CP006568
Gammaproteobacteria
Candidatus Sodalis pierantonius str. SOPE [CP006568]
3911009
3910934
-
Ala
TGC
[Ensembl]
¡û
>C151009211
CP006568
Gammaproteobacteria
Candidatus Sodalis pierantonius str. SOPE [CP006568]
3846555
3846480
-
Ala
TGC
[Ensembl]
¡û
>C151086330
CP011787
Gammaproteobacteria
Candidatus Baumannia cicadellinicola B-GSS [CP011787]
441667
441740
+
Ala
TGC
-
¡û
>C11102020
CP002302
Gammaproteobacteria
Buchnera aphidicola str. JF99 [Acyrthosiphon pisum] [CP002302]
276884
276958
+
Ala
TGC
[Ensembl]
¡û
>C11102148
CP002645
Gammaproteobacteria
Buchnera aphidicola str. Ak [Acyrthosiphon kondoi] [CP002645]
276827
276901
+
Ala
TGC
[Ensembl]
¡û
>C161108572
LN999831
Gammaproteobacteria
Candidatus Mikella endobia [LN999831]
173641
173715
+
Ala
TGC
[Ensembl]
¡û
>W1610932965
LUID01000099
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [LUID]
2
77
+
Ala
TGC
[ENA]
¡û
>ENV004283
DQ834350
Environmental sample from ENV division of INSDC
1277
1354
+
Ala
TGC
[ENA]
>ENV004286
DQ834353
Environmental sample from ENV division of INSDC
1275
1352
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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