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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254944 (114 seq.)
>W1710866821
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
88826
88750
-
Ile
GAT
[ENA]
¡û
>W1710881180
LMSW01000014
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
205089
205165
+
Ile
GAT
[ENA]
¡û
>W1711517431
MLJO01000018
Actinomycetota
Intrasporangium flavum flava [MLJO]
18710
18634
-
Ile
GAT
[ENA]
¡û
>C171036916
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
1400884
1400808
-
Ile
GAT
-
¡û
>W131170921
ARFV01000072
Actinomycetota
Actinokineospora enzanensis DSM 44649 [ARFV]
5143
5069
-
Ile
GAT
[ENA]
¡û
>W131185525
ARTT01000010
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
187151
187075
-
Ile
GAT
[ENA]
¡û
>W131229392
AUGT01000019
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
106127
106201
+
Ile
GAT
[ENA]
¡û
>WENV180000093
CZKB01000027
[CZKB] metagenome; liquid mineral medium
274663
274589
-
Ile
GAT
[ENA]
¡û
>WENV180102695
OAOZ01006028
[OAOZ] marine metagenome; ENVO:00002010
403
329
-
Ile
GAT
[ENA]
¡û
>WENV180103267
OAPA01011484
[OAPA] marine metagenome; ENVO:00002010
246
320
+
Ile
GAT
[ENA]
¡û
>WENV180114572
OAPS01020429
[OAPS] marine metagenome; sea water
611
537
-
Ile
GAT
[ENA]
¡û
>WENV180208935
OBAK01000237
[OBAK] marine metagenome; ENVO.00002150
2268
2342
+
Ile
GAT
[ENA]
¡û
>WENV180209581
OBAL01005451
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1441
1367
-
Ile
GAT
[ENA]
¡û
>WENV180359516
OBNS01001012
[OBNS] marine metagenome; Seawater
455
381
-
Ile
GAT
[ENA]
¡û
>WENV180368073
OBOF01022150
[OBOF] marine metagenome; ENVO:00002010
225
299
+
Ile
GAT
[ENA]
¡û
>WENV180376567
OBOM01028954
[OBOM] marine metagenome; Seawater
319
393
+
Ile
GAT
[ENA]
¡û
>WENV180391148
OBPM01019871
[OBPM] marine metagenome; ENVO:00002010
152
226
+
Ile
GAT
[ENA]
¡û
>WENV180391881
OBPN01084693
[OBPN] marine metagenome; seawater
198
272
+
Ile
GAT
[ENA]
¡û
>WENV180392758
OBPP01007951
[OBPP] marine metagenome; ENVO:00002042
210
284
+
Ile
GAT
[ENA]
¡û
>WENV180395852
OBPT01194295
[OBPT] marine metagenome; ENVO:00002010 seawater
305
231
-
Ile
GAT
[ENA]
¡û
>WENV180399483
OBQO01000003
[OBQO] marine metagenome; ENVO:00002010
60436
60510
+
Ile
GAT
[ENA]
¡û
>WENV180590815
OCOU01014236
[OCOU] marine metagenome; Water
76
2
-
Ile
GAT
[ENA]
¡û
>WENV180591371
OCOV01015066
[OCOV] marine metagenome; ENVO:01000301
649
575
-
Ile
GAT
[ENA]
¡û
>WENV180650309
OCSY01005566
[OCSY] marine metagenome; 30 L Plastic container
260
186
-
Ile
GAT
[ENA]
¡û
>WENV181155287
OEID01069015
[OEID] soil metagenome; soil
217
143
-
Ile
GAT
[ENA]
¡û
>WENV181320933
OFKJ01000481
[OFKJ] marine metagenome; sea ice
479
405
-
Ile
GAT
[ENA]
¡û
>WENV181322032
OFKP01000819
[OFKP] marine metagenome; sea ice
1379
1453
+
Ile
GAT
[ENA]
¡û
>WENV181324136
OFLC01000388
[OFLC] marine metagenome; melt pond
1190
1116
-
Ile
GAT
[ENA]
¡û
>WENV181324419
OFLE01007309
[OFLE] marine metagenome; sea ice
90
164
+
Ile
GAT
[ENA]
¡û
>WENV181324491
OFLF01000012
[OFLF] marine metagenome; melt pond
9476
9550
+
Ile
GAT
[ENA]
¡û
>WENV181325860
OFLJ01036186
[OFLJ] seawater metagenome; seawater
253
327
+
Ile
GAT
[ENA]
¡û
>WENV181369591
OFQP01010057
[OFQP] freshwater metagenome; Freshwater Lake
460
536
+
Ile
GAT
[ENA]
¡û
>W141142483
AWQS01000057
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
571
495
-
Ile
GAT
[ENA]
¡û
>W141143088
AWSA01000045
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
25526
25450
-
Ile
GAT
[ENA]
¡û
>W141170063
AXWW01000013
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
120640
120714
+
Ile
GAT
[ENA]
¡û
>WENV181843415
OGVU01013783
[OGVU] freshwater metagenome; freshwater
628
702
+
Ile
GAT
[ENA]
¡û
>WENV183619714
OOFQ01037156
[OOFQ] marine metagenome; seawater
253
327
+
Ile
GAT
[ENA]
¡û
>WENV183625484
OOGF01041388
[OOGF] marine metagenome; seawater
425
499
+
Ile
GAT
[ENA]
¡û
>WENV183625625
OOGG01004361
[OOGG] marine metagenome; sea ice
982
908
-
Ile
GAT
[ENA]
¡û
>WENV170567522
FLMP01001513
[FLMP] seawater metagenome; seawater
387
313
-
Ile
GAT
[ENA]
¡û
>WENV170645651
JNSL01000179
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14
90
+
Ile
GAT
[ENA]
¡û
>WENV170949882
MEHZ011461820
[MEHZ] marine metagenome; marine surface water
3501
3427
-
Ile
GAT
[ENA]
¡û
>C181081496
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
12191
12266
+
Ile
GAT
-
¡û
>C181196292
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
3777677
3777753
+
Ile
GAT
-
¡û
>C191064769
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
12196
12271
+
Ile
GAT
-
¡û
>C191120838
CP034170
Actinomycetota
Nakamurella antarctica S14-144 [CP034170]
11783
11857
+
Ile
GAT
-
¡û
>C191178353
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
10075
10151
+
Ile
GAT
-
¡û
>C191178392
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
10097
10173
+
Ile
GAT
-
¡û
>W141564778
JIBA01000010
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
169715
169791
+
Ile
GAT
[ENA]
¡û
>W09108117
ABTA01000005
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
208216
208140
-
Ile
GAT
[ENA]
¡û
>W09109485
ABUH01000001
Actinomycetota
Nakamurella multipartita DSM 44233 [ABUH]
350137
350213
+
Ile
GAT
[ENA]
¡û
>W141750822
JNSE01000033
Actinomycetota
actinobacterium acAMD-2 [JNSE]
25820
25744
-
Ile
GAT
[ENA]
¡û
>W141757621
JNYA01000865
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
493
569
+
Ile
GAT
[ENA]
¡û
>W141758371
JNYO01000004
Actinomycetota
Saccharothrix syringae [JNYO]
96291
96215
-
Ile
GAT
[ENA]
¡û
>W141766532
JOEA01000020
Actinomycetota
Lentzea albidocapillata [JOEA]
205199
205273
+
Ile
GAT
[ENA]
¡û
>W141768595
JOFI01000003
Actinomycetota
Lentzea aerocolonigenes [JOFI]
181262
181188
-
Ile
GAT
[ENA]
¡û
>W141771453
JOHE01000146
Actinomycetota
Lentzea aerocolonigenes [JOHE]
674
600
-
Ile
GAT
[ENA]
¡û
>W141773535
JOIN01000004
Actinomycetota
Corynebacterium variabile [JOIN]
164559
164483
-
Ile
GAT
[ENA]
¡û
>C09100610
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
12199
12275
+
Ile
GAT
[Ensembl]
¡û
>W1810295962
PTIX01000006
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
354523
354597
+
Ile
GAT
[ENA]
¡û
>C151025265
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
11406
11482
+
Ile
GAT
[Ensembl]
¡û
>W2010603275
JABJQY010000002
Actinomycetota
Nocardioides sp. zg-1308 [JABJQY]
1162500
1162574
+
Ile
GAT
[ENA]
¡û
>W2010671567
JACCBW010000001
Actinomycetota
Nocardioides cavernae AT2.17 [JACCBW]
1484372
1484298
-
Ile
GAT
[ENA]
¡û
>W2010705422
JACHJN010000009
Actinomycetota
Saccharothrix tamanrassetensis CECT 8640 [JACHJN]
49841
49916
+
Ile
GAT
[ENA]
¡û
>W2010705704
JACHJS010000001
Actinomycetota
Saccharothrix violaceirubra DSM 45084 [JACHJS]
7079398
7079323
-
Ile
GAT
[ENA]
¡û
>W2010714304
JACHVT010000005
Actinomycetota
Terracoccus luteus B3ACCR2 [JACHVT]
104232
104308
+
Ile
GAT
[ENA]
¡û
>W2011389395
RBXO01000001
Actinomycetota
Saccharothrix australiensis DSM 43800 [RBXO]
343575
343650
+
Ile
GAT
[ENA]
¡û
>W2011389571
RBXR01000001
Actinomycetota
Saccharothrix variisporea DSM 43911 [RBXR]
5266026
5265951
-
Ile
GAT
[ENA]
¡û
>W2011389684
RBXT01000001
Actinomycetota
Terracoccus luteus DSM 44267 [RBXT]
3484340
3484416
+
Ile
GAT
[ENA]
¡û
>W2011393471
RCDD01000001
Actinomycetota
Actinokineospora cianjurensis DSM 45657 [RCDD]
730942
730867
-
Ile
GAT
[ENA]
¡û
>W2011553295
SDWS01000012
Actinomycetota
Nocardioides glacieisoli HLT3-15 [SDWS]
71403
71477
+
Ile
GAT
[ENA]
¡û
>W2011553407
SDWV01000009
Actinomycetota
Nocardioides sp. HLT2-9 [SDWV]
112178
112252
+
Ile
GAT
[ENA]
¡û
>W2012017545
VFMN01000001
Actinomycetota
Lapillicoccus jejuensis DSM 18607 [VFMN]
1479515
1479440
-
Ile
GAT
[ENA]
¡û
>W2012019935
VFOC01000001
Actinomycetota
Terrabacter sp. SLBN-196 [VFOC]
1112049
1111973
-
Ile
GAT
[ENA]
¡û
>W2012021760
VFPM01000005
Actinomycetota
Humibacillus xanthopallidus KV-663 [VFPM]
46219
46143
-
Ile
GAT
[ENA]
¡û
>W2012022251
VFPW01000001
Actinomycetota
Terrabacter sp. 3211 [VFPW]
209041
208965
-
Ile
GAT
[ENA]
¡û
>W2012022273
VFPX01000001
Actinomycetota
Terrabacter sp. 3264 [VFPX]
740541
740617
+
Ile
GAT
[ENA]
¡û
>W2012022516
VFQB01000001
Actinomycetota
Terrabacter lapilli 3265 [VFQB]
345593
345517
-
Ile
GAT
[ENA]
¡û
>W2012022735
VFQF01000003
Actinomycetota
Humibacillus xanthopallidus DSM 21776 [VFQF]
61694
61770
+
Ile
GAT
[ENA]
¡û
>SRA1053591
SRR035098.445953
454 Sequencing (SRP001819)
128
202
+
Ile
GAT
[SRA]
>W2110033603
BMNZ01000002
Actinomycetota
Terrabacter tumescens JCM 1365 [BMNZ]
164537
164461
-
Ile
GAT
[ENA]
¡û
>W2110037874
BMRE01000002
Actinomycetota
Lechevalieria flava JCM 3296 [BMRE]
287790
287864
+
Ile
GAT
[ENA]
¡û
>W2110051966
BNAR01000003
Actinomycetota
Lentzea cavernae CGMCC 4.7367 [BNAR]
21301
21227
-
Ile
GAT
[ENA]
¡û
>W2110064554
BOQO01000928
Actinomycetota
Planomonospora venezuelensis NBRC 15590 [BOQO]
880
806
-
Ile
GAT
[ENA]
¡û
>W2110239582
JACMYB010000001
Actinomycetota
Nocardioides sp. zg-1228 [JACMYB]
807434
807508
+
Ile
GAT
[ENA]
¡û
>W2110268859
JACVCU010000001
Actinomycetota
Terrabacter sp. MAHUQ-38 [JACVCU]
670530
670454
-
Ile
GAT
[ENA]
¡û
>W2110285499
JACXYZ010000001
Actinomycetota
Nocardioides cavernae KCTC 39551 [JACXYZ]
1139505
1139579
+
Ile
GAT
[ENA]
¡û
>W2110306202
JADDUE010000001
Actinomycetota
Saccharopolyspora sp. HNM0986 [JADDUE]
157849
157923
+
Ile
GAT
[ENA]
¡û
>W2110319776
JADHZD010000009
Actinomycetota
Nocardioides sp. JXJ CY 38 [JADHZD]
123797
123723
-
Ile
GAT
[ENA]
¡û
>W2110446378
JAERSG010000001
Actinomycetota
Nocardioides sp. G10 [JAERSG]
657232
657158
-
Ile
GAT
[ENA]
¡û
>W2110458855
JAFBCK010000001
Actinomycetota
Actinokineospora baliensis DSM 45656 [JAFBCK]
1399255
1399329
+
Ile
GAT
[ENA]
¡û
>W2110459479
JAFBCX010000002
Actinomycetota
Lentzea nigeriaca DSM 45680 [JAFBCX]
123628
123702
+
Ile
GAT
[ENA]
¡û
>W2110660680
JAHXGQ010000006
Actinomycetota
Saccharothrix sp. SC076 [JAHXGQ]
115848
115923
+
Ile
GAT
[ENA]
¡û
>C201058366
CP034550
Actinomycetota
Saccharothrix syringae NRRL B-16468 [CP034550]
12392
12467
+
Ile
GAT
-
¡û
>C201276007
CP054056
Actinomycetota
Aquiluna sp. 15G-AUS-rot [CP054056]
9600
9674
+
Ile
GAT
-
¡û
>C211280927
CP070961
Actinomycetota
Nocardioides sp. zg-1228 [CP070961]
12167
12241
+
Ile
GAT
-
¡û
>C241200875
CP107840
Actinomycetota
Lentzea sp. NBC_00516 [CP107840]
7148975
7148901
-
Ile
GAT
-
¡û
>C241374808
CP143557
Actinomycetota
Terrabacter sp. C0L_2 [CP143557]
1003501
1003577
+
Ile
GAT
-
¡û
>W2310028243
BSSB01000001
Actinomycetota
Actinokineospora globicatena NBRC 15667 [BSSB]
1844678
1844752
+
Ile
GAT
[ENA]
¡û
>C10109861
CP001737
Actinomycetota
Nakamurella multipartita DSM 44233 [CP001737]
14272
14348
+
Ile
GAT
[Ensembl]
¡û
>W1511529154
JYJG01000129
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
15209
15283
+
Ile
GAT
[ENA]
¡û
>W1511534719
JYOE01000007
Actinomycetota
Terrabacter sp. 28 [JYOE]
193984
193908
-
Ile
GAT
[ENA]
¡û
>W1511697437
LGDY01000014
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
77790
77864
+
Ile
GAT
[ENA]
¡û
>W121063454
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
86016
86090
+
Ile
GAT
[ENA]
¡û
>W1610723182
LMDE01000014
Actinomycetota
Nocardioides sp. Root122 [LMDE]
64198
64272
+
Ile
GAT
[ENA]
¡û
>W1610729167
LMHU01000001
Actinomycetota
Terrabacter sp. Root181 [LMHU]
88826
88750
-
Ile
GAT
[ENA]
¡û
>W1610743526
LMSW01000014
Actinomycetota
Terrabacter sp. Soil810 [LMSW]
205089
205165
+
Ile
GAT
[ENA]
¡û
>W1610743572
LMSX01000012
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
49954
50030
+
Ile
GAT
[ENA]
¡û
>W1710515819
FNCC01000029
Actinomycetota
Lentzea fradiae [FNCC]
12011
12085
+
Ile
GAT
[ENA]
¡û
>W1710519458
FNET01000006
Actinomycetota
Lentzea albidocapillata violacea [FNET]
194900
194974
+
Ile
GAT
[ENA]
¡û
>W1710524688
FNIX01000014
Actinomycetota
Lentzea jiangxiensis [FNIX]
137001
136927
-
Ile
GAT
[ENA]
¡û
>W1710534302
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
1471951
1471877
-
Ile
GAT
[ENA]
¡û
>W1710556301
FOKC01000007
Actinomycetota
Nocardioides alpinus [FOKC]
1200
1126
-
Ile
GAT
[ENA]
¡û
>W1710574727
FOYL01000004
Actinomycetota
Lentzea waywayandensis [FOYL]
512591
512517
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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