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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255588 (86 seq.)
>W1711006467
LQOJ01000048
Actinomycetota
Mycolicibacterium fallax [LQOJ]
113319
113244
-
Arg
CCG
[ENA]
¡û
>W1711007512
LQPF01000044
Actinomycetota
Mycobacterium lacus [LQPF]
84785
84860
+
Arg
CCG
[ENA]
¡û
>W1711172882
LWCL01000115
Actinomycetota
Mycobacterium kansasii [LWCL]
5766
5839
+
Arg
CCG
[ENA]
¡û
>W131191161
ASHR01000030
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
104031
103956
-
Arg
CCG
[ENA]
¡û
>W1711277100
LZIQ01000116
Actinomycetota
Mycolicibacterium celeriflavum 852002-51296_SCH5728562-a [LZIQ]
27383
27458
+
Arg
CCG
[ENA]
¡û
>W131044932
AMRA01000089
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [AMRA]
23958
24031
+
Arg
CCG
[ENA]
¡û
>W131165726
ARBU01000050
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [ARBU]
27819
27892
+
Arg
CCG
[ENA]
¡û
>W1711768040
MVBM01000002
Actinomycetota
Mycobacterium kansasii [MVBM]
406866
406939
+
Arg
CCG
[ENA]
¡û
>W1711768083
MVBN01000002
Actinomycetota
Mycobacterium kansasii [MVBN]
403295
403368
+
Arg
CCG
[ENA]
¡û
>W131215909
ATVK01000007
Actinomycetota
Gordonia hirsuta DSM 44140 = NBRC 16056 [ATVK]
10802
10875
+
Arg
CCG
[ENA]
¡û
>W131229944
AUHE01000013
Actinomycetota
Gordonia shandongensis DSM 45094 [AUHE]
30576
30503
-
Arg
CCG
[ENA]
¡û
>W131239523
BANT01000013
Actinomycetota
Gordonia hirsuta DSM 44140 = NBRC 16056 [BANT]
10802
10875
+
Arg
CCG
[ENA]
¡û
>W131240873
BAOP01000035
Actinomycetota
Gordonia malaquae NBRC 108250 [BAOP]
48546
48621
+
Arg
CCG
[ENA]
¡û
>WENV180104224
OAPB01131097
[OAPB] marine metagenome; Sterile flask
143
216
+
Arg
CCG
[ENA]
¢þ
>WENV182540425
OJAJ01000575
[OJAJ] seawater metagenome; Sea water
350
423
+
Arg
CCG
[ENA]
¢þ
>WENV182544279
OJBF01001526
[OJBF] seawater metagenome; Sea water
1105
1032
-
Arg
CCG
[ENA]
¢þ
>WENV182545609
OJBN01008954
[OJBN] seawater metagenome; Sea water
469
396
-
Arg
CCG
[ENA]
¢þ
>WENV182548554
OJBW01002269
[OJBW] seawater metagenome; Sea water
1043
970
-
Arg
CCG
[ENA]
¢þ
>WENV182554074
OJCT01000535
[OJCT] seawater metagenome; Sea water
1211
1284
+
Arg
CCG
[ENA]
¢þ
>WENV182558570
OJDM01019079
[OJDM] seawater metagenome; Sea water
166
239
+
Arg
CCG
[ENA]
¢þ
>WENV182561593
OJDX01000021
[OJDX] seawater metagenome; Sea water
7115
7188
+
Arg
CCG
[ENA]
¢þ
>WENV182561924
OJDY01000014
[OJDY] seawater metagenome; Sea water
29321
29248
-
Arg
CCG
[ENA]
¢þ
>WENV182562669
OJEA01000031
[OJEA] seawater metagenome; Sea water
30001
29928
-
Arg
CCG
[ENA]
¢þ
>WENV182564051
OJEE01000017
[OJEE] seawater metagenome; Sea water
26873
26800
-
Arg
CCG
[ENA]
¢þ
>WENV182568984
OJEY01000003
[OJEY] seawater metagenome; Sea water
34979
34906
-
Arg
CCG
[ENA]
¢þ
>WENV182569688
OJFB01000019
[OJFB] seawater metagenome; Sea water
21815
21742
-
Arg
CCG
[ENA]
¢þ
>WENV182574546
OJFS01000016
[OJFS] seawater metagenome; Sea water
86095
86168
+
Arg
CCG
[ENA]
¢þ
>WENV182576613
OJFY01000546
[OJFY] seawater metagenome; Sea water
777
850
+
Arg
CCG
[ENA]
¢þ
>WENV182577940
OJGM01000063
[OJGM] seawater metagenome; Sea water
701
774
+
Arg
CCG
[ENA]
¢þ
>WENV182583336
OJHD01004402
[OJHD] seawater metagenome; Sea water
977
1050
+
Arg
CCG
[ENA]
¢þ
>WENV182584824
OJHG01014361
[OJHG] seawater metagenome; Sea water
536
463
-
Arg
CCG
[ENA]
¢þ
>W141285502
JANY01000002
Actinomycetota
Mycobacterium kansasii 824 [JANY]
655351
655278
-
Arg
CCG
[ENA]
¡û
>W141285585
JAOA01000002
Actinomycetota
Mycobacterium kansasii 662 [JAOA]
470843
470770
-
Arg
CCG
[ENA]
¡û
>WENV183054493
OLGU01000002
[OLGU] seawater metagenome; Sea water
181781
181854
+
Arg
CCG
[ENA]
¢þ
>WENV183619505
OOFQ01010888
[OOFQ] marine metagenome; seawater
166
93
-
Arg
CCG
[ENA]
¢þ
>WENV170570736
FLOH01000020
[FLOH] marine metagenome; water
260303
260376
+
Arg
CCG
[ENA]
¢þ
>WENV170572651
FLOH01001118
[FLOH] marine metagenome; water
22291
22218
-
Arg
CCG
[ENA]
¢þ
>WENV170598684
FUWD010044878
[FUWD] metagenome; unknown
244
169
-
Arg
CCG
[ENA]
¢þ
>WENV170600692
FUWD010138729
[FUWD] metagenome; unknown
656
583
-
Arg
CCG
[ENA]
¢þ
>WENV170624264
FUWD013178700
[FUWD] metagenome; unknown
1086
1159
+
Arg
CCG
[ENA]
¢þ
>WENV170626824
FUWD013229743
[FUWD] metagenome; unknown
25790
25717
-
Arg
CCG
[ENA]
¢þ
>WENV170626980
FUWD013230617
[FUWD] metagenome; unknown
2611
2538
-
Arg
CCG
[ENA]
¢þ
>WENV170632541
FUWD013384196
[FUWD] metagenome; unknown
1086
1159
+
Arg
CCG
[ENA]
¢þ
>WENV170933937
MDTG01229381
[MDTG] marine metagenome; seawater
777
702
-
Arg
CCG
[ENA]
¢þ
>WENV170935835
MDTG01264464
[MDTG] marine metagenome; seawater
1960
1885
-
Arg
CCG
[ENA]
¢þ
>WENV170951291
MEHZ011546141
[MEHZ] marine metagenome; marine surface water
22029
21956
-
Arg
CCG
[ENA]
¢þ
>C181153042
CP027433
Actinomycetota
Gordonia iterans Co17 [CP027433]
1612657
1612730
+
Arg
CCG
-
¡û
>C181226837
LT906483
Actinomycetota
Mycolicibacterium thermoresistibile NCTC10409 [LT906483]
3382976
3383049
+
Arg
CCG
-
¡û
>C191189826
LR026975
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [LR026975]
2892353
2892426
+
Arg
CCG
-
¡û
>W141727418
JNDJ01000137
Actinomycetota
Mycobacterium kansasii [JNDJ]
5689
5762
+
Arg
CCG
[ENA]
¡û
>W09117009
ACBV01000020
Actinomycetota
Mycobacterium kansasii ATCC 12478 [ACBV]
55285
55358
+
Arg
CCG
[ENA]
¡û
>W1910373879
FUHU01000036
Actinomycetota
Agrococcus casei LMG 22410 [FUHU]
1295
1222
-
Arg
CCG
[ENA]
¡û
>C141009002
CP006835
Actinomycetota
Mycobacterium kansasii ATCC 12478 [CP006835]
1440843
1440916
+
Arg
CCG
[Ensembl]
¡û
>W1910989783
NKQW01000001
Actinomycetota
Mycobacterium kansasii K4 [NKQW]
1414439
1414512
+
Arg
CCG
[ENA]
¡û
>W1910989828
NKQX01000001
Actinomycetota
Mycobacterium kansasii K19 [NKQX]
1414439
1414512
+
Arg
CCG
[ENA]
¡û
>W1910989873
NKQY01000001
Actinomycetota
Mycobacterium kansasii K14 [NKQY]
1414439
1414512
+
Arg
CCG
[ENA]
¡û
>W1810169223
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
783123
783197
+
Arg
CCG
[ENA]
¡û
>W1810261763
PQOM01000004
Actinomycetota
Mycobacterium kansasii BR6498 [PQOM]
104592
104665
+
Arg
CCG
[ENA]
¡û
>W1810261835
PQON01000104
Actinomycetota
Mycobacterium kansasii BR7287 [PQON]
5760
5833
+
Arg
CCG
[ENA]
¡û
>W1810261853
PQOO01000002
Actinomycetota
Mycobacterium kansasii BR6884 [PQOO]
66785
66712
-
Arg
CCG
[ENA]
¡û
>W1810261903
PQOP01000005
Actinomycetota
Mycobacterium kansasii BR6849 [PQOP]
104440
104513
+
Arg
CCG
[ENA]
¡û
>W1810261941
PQOQ01000002
Actinomycetota
Mycobacterium kansasii BR10953 [PQOQ]
104029
104102
+
Arg
CCG
[ENA]
¡û
>W1810261991
PQOR01000003
Actinomycetota
Mycobacterium kansasii BR10742 [PQOR]
16248
16175
-
Arg
CCG
[ENA]
¡û
>C151052476
CP009481
Actinomycetota
Mycobacterium kansasii [CP009481]
1433961
1434034
+
Arg
CCG
[Ensembl]
¡û
>C151052555
CP009482
Actinomycetota
Mycobacterium avium [CP009482]
1359134
1359061
-
Arg
CCG
[Ensembl]
¡û
>C151052569
CP009483
Actinomycetota
Mycobacterium kansasii [CP009483]
1433217
1433290
+
Arg
CCG
[Ensembl]
¡û
>C151052847
CP009493
Actinomycetota
Mycobacterium avium [CP009493]
1359432
1359359
-
Arg
CCG
[Ensembl]
¡û
>C151055764
CP009614
Actinomycetota
Mycobacterium avium [CP009614]
1363202
1363129
-
Arg
CCG
[Ensembl]
¡û
>SRA1023580
SRR035084.128970
454 Sequencing (SRP001805)
78
152
+
Arg
CCG
[SRA]
>SRA1043921
SRR035092.194289
454 Sequencing (SRP001813)
217
144
-
Arg
CCG
[SRA]
>SRA1045484
SRR035093.104399
454 Sequencing (SRP001814)
4
77
+
Arg
CCG
[SRA]
>SRA1046568
SRR035093.334951
454 Sequencing (SRP001814)
240
167
-
Arg
CCG
[SRA]
>SRA1051775
SRR035098.74556
454 Sequencing (SRP001819)
187
114
-
Arg
CCG
[SRA]
>SRA1053424
SRR035098.403064
454 Sequencing (SRP001819)
94
167
+
Arg
CCG
[SRA]
>SRA1054461
SRR035099.137270
454 Sequencing (SRP001820)
289
364
+
Arg
CCG
[SRA]
>WENV045546
AACY022526682
Marine microbial communities from Global Ocean Sampling (GOS)
763
688
-
Arg
CCG
[ENA]
>W121123657
BAED01000048
Actinomycetota
Gordonia amarae NBRC 15530 [BAED]
111885
111958
+
Arg
CCG
[ENA]
¡û
>W121020656
AGVE01000042
Actinomycetota
Mycolicibacterium thermoresistibile ATCC 19527 [AGVE]
544021
544094
+
Arg
CCG
[ENA]
¡û
>W121126677
BAHE01000010
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
43278
43203
-
Arg
CCG
[ENA]
¡û
>W1610070211
BCTB01000033
Actinomycetota
Mycolicibacterium thermoresistibile [BCTB]
3681
3608
-
Arg
CCG
[ENA]
¡û
>W1610981487
LWCL01000115
Actinomycetota
Mycobacterium kansasii [LWCL]
5766
5839
+
Arg
CCG
[ENA]
¡û
>W1611036385
LZIQ01000116
Actinomycetota
Mycolicibacterium celeriflavum 852002-51296_SCH5728562-a [LZIQ]
27383
27458
+
Arg
CCG
[ENA]
¡û
>W1710067584
BCTB01000033
Actinomycetota
Mycolicibacterium thermoresistibile [BCTB]
3681
3608
-
Arg
CCG
[ENA]
¡û
>W1710534599
FNRZ01000003
Actinomycetota
Gordonia malaquae [FNRZ]
1537465
1537540
+
Arg
CCG
[ENA]
¡û
>W1710575820
FOZN01000001
Actinomycetota
Agrococcus baldri [FOZN]
240743
240818
+
Arg
CCG
[ENA]
¡û
>W1710598108
FTNT01000002
Actinomycetota
Williamsia sterculiae [FTNT]
572655
572728
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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