This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255852 (96 seq.)
>W1710919530
LNXS01000005
Gammaproteobacteria
Legionella anisa [LNXS]
76
1
-
Glu
TTC
[ENA]
¡û
>W1710919618
LNXU01000013
Gammaproteobacteria
Legionella bozemanae [LNXU]
57894
57819
-
Glu
TTC
[ENA]
¡û
>W1710919619
LNXU01000013
Gammaproteobacteria
Legionella bozemanae [LNXU]
57766
57691
-
Glu
TTC
[ENA]
¡û
>W1710919717
LNXW01000013
Gammaproteobacteria
Legionella cherrii [LNXW]
1354025
1353950
-
Glu
TTC
[ENA]
¡û
>W1710919718
LNXW01000013
Gammaproteobacteria
Legionella cherrii [LNXW]
1353909
1353834
-
Glu
TTC
[ENA]
¡û
>W1710919839
LNXZ01000008
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [LNXZ]
229500
229575
+
Glu
TTC
[ENA]
¡û
>W1710919840
LNXZ01000008
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [LNXZ]
229625
229700
+
Glu
TTC
[ENA]
¡û
>W1710919992
LNYD01000012
Gammaproteobacteria
Fluoribacter gormanii [LNYD]
10311
10236
-
Glu
TTC
[ENA]
¡û
>W1710920510
LNYQ01000013
Gammaproteobacteria
Legionella parisiensis [LNYQ]
1277157
1277232
+
Glu
TTC
[ENA]
¡û
>W1710920826
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
268724
268799
+
Glu
TTC
[ENA]
¡û
>W1710920870
LNYZ01000006
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
59818
59743
-
Glu
TTC
[ENA]
¡û
>W1710920871
LNYZ01000006
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
59693
59618
-
Glu
TTC
[ENA]
¡û
>W1710920900
LNZA01000001
Gammaproteobacteria
Legionella tucsonensis [LNZA]
1009048
1009123
+
Glu
TTC
[ENA]
¡û
>W1711079694
LSOG01000051
Gammaproteobacteria
Legionella parisiensis [LSOG]
18921
18996
+
Glu
TTC
[ENA]
¡û
>W1711079720
LSOG01000158
Gammaproteobacteria
Legionella parisiensis [LSOG]
78
3
-
Glu
TTC
[ENA]
¡û
>W1711350335
MCRI01000003
Gammaproteobacteria
Methylophaga muralis [MCRI]
14085
14010
-
Glu
TTC
[ENA]
¡û
>W1711505256
MKVI01000186
Gammaproteobacteria
Legionella sp. 40-6 [MKVI]
13216
13141
-
Glu
TTC
[ENA]
¡û
>W1711505257
MKVI01000186
Gammaproteobacteria
Legionella sp. 40-6 [MKVI]
13109
13034
-
Glu
TTC
[ENA]
¡û
>W1711957279
NBTX01000001
Gammaproteobacteria
Legionella anisa [NBTX]
1824030
1824105
+
Glu
TTC
[ENA]
¡û
>W1711957280
NBTX01000001
Gammaproteobacteria
Legionella anisa [NBTX]
1824158
1824233
+
Glu
TTC
[ENA]
¡û
>C171130473
LT670851
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipseudotaxifoliae [LT670851]
931509
931434
-
Glu
TTC
-
¡û
>W131186067
ARVU01000001
Gammaproteobacteria
Cycloclasticus pugetii PS-1 [ARVU]
980374
980449
+
Glu
TTC
[ENA]
¡û
>W131163528
AQZU01000003
Gammaproteobacteria
Methylovulum miyakonense HT12 [AQZU]
368300
368225
-
Glu
TTC
[ENA]
¡û
>W131163529
AQZU01000003
Gammaproteobacteria
Methylovulum miyakonense HT12 [AQZU]
368178
368103
-
Glu
TTC
[ENA]
¡û
>W131166851
ARCU01000003
Gammaproteobacteria
Methylosarcina fibrata AML-C10 [ARCU]
646958
647033
+
Glu
TTC
[ENA]
¡û
>W131166852
ARCU01000003
Gammaproteobacteria
Methylosarcina fibrata AML-C10 [ARCU]
647125
647200
+
Glu
TTC
[ENA]
¡û
>W131242376
CANP01000002
Gammaproteobacteria
Legionella anisa str. Linanisette [CANP]
57388
57463
+
Glu
TTC
[ENA]
¡û
>W131242377
CANP01000002
Gammaproteobacteria
Legionella anisa str. Linanisette [CANP]
57516
57591
+
Glu
TTC
[ENA]
¡û
>WENV180027209
FTIX01000926
[FTIX] metagenome; soil
1331
1406
+
Glu
TTC
[ENA]
¢þ
>WENV180388498
OBPH01014220
[OBPH] marine metagenome; Sterile flask
456
531
+
Glu
TTC
[ENA]
¢þ
>WENV180391839
OBPN01061687
[OBPN] marine metagenome; seawater
236
161
-
Glu
TTC
[ENA]
¢þ
>W141187086
AYLO01000008
Gammaproteobacteria
Methyloglobulus morosus KoM1 [AYLO]
109568
109643
+
Glu
TTC
[ENA]
¡û
>W141215961
AZUN01000001
Gammaproteobacteria
Methylomicrobium lacus LW14 [AZUN]
754689
754764
+
Glu
TTC
[ENA]
¡û
>W141215962
AZUN01000001
Gammaproteobacteria
Methylomicrobium lacus LW14 [AZUN]
754865
754940
+
Glu
TTC
[ENA]
¡û
>WENV182578759
OJGP01001606
[OJGP] seawater metagenome; Sea water
231
156
-
Glu
TTC
[ENA]
¢þ
>WENV183668198
ORJL010720000
[ORJL] groundwater metagenome; groundwater
118654
118579
-
Glu
TTC
[ENA]
¢þ
>WENV183668199
ORJL010720000
[ORJL] groundwater metagenome; groundwater
118532
118457
-
Glu
TTC
[ENA]
¢þ
>WENV183670779
ORJL010984244
[ORJL] groundwater metagenome; groundwater
14
89
+
Glu
TTC
[ENA]
¢þ
>WENV170555621
CXWL01001487
[CXWL] groundwater metagenome; biofilm material
14
89
+
Glu
TTC
[ENA]
¢þ
>WENV170555622
CXWL01001487
[CXWL] groundwater metagenome; biofilm material
172
247
+
Glu
TTC
[ENA]
¢þ
>WENV170573055
FLOH01005108
[FLOH] marine metagenome; water
298
223
-
Glu
TTC
[ENA]
¢þ
>WENV170573056
FLOH01005108
[FLOH] marine metagenome; water
123
48
-
Glu
TTC
[ENA]
¢þ
>WENV170640999
JFJP01032112
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3390
3317
-
Glu
TTC
[ENA]
¢þ
>WENV170641000
JFJP01032135
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
329
254
-
Glu
TTC
[ENA]
¢þ
>WENV170641001
JFJP01032135
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
77
2
-
Glu
TTC
[ENA]
¢þ
>WENV170641002
JFJP01032148
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4476
4401
-
Glu
TTC
[ENA]
¢þ
>WENV170672950
LAZR01003693
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1853
1778
-
Glu
TTC
[ENA]
¢þ
>WENV170672951
LAZR01003693
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1699
1624
-
Glu
TTC
[ENA]
¢þ
>WENV170672952
LAZR01003693
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1545
1470
-
Glu
TTC
[ENA]
¢þ
>WENV170672953
LAZR01003693
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1391
1316
-
Glu
TTC
[ENA]
¢þ
>WENV170672954
LAZR01003693
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
1237
1162
-
Glu
TTC
[ENA]
¢þ
>WENV170944124
MDTG01408752
[MDTG] marine metagenome; seawater
109756
109831
+
Glu
TTC
[ENA]
¢þ
>C191198875
LR134173
Gammaproteobacteria
Legionella cherrii NCTC11976 [LR134173]
2934272
2934197
-
Glu
TTC
-
¡û
>C191198876
LR134173
Gammaproteobacteria
Legionella cherrii NCTC11976 [LR134173]
2934156
2934081
-
Glu
TTC
-
¡û
>C191219877
LR217725
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipseudotaxifoliae [LR217725]
931243
931168
-
Glu
TTC
-
¡û
>W141561491
JHYM01000005
Gammaproteobacteria
Legionella cherrii DSM 19213 [JHYM]
634387
634462
+
Glu
TTC
[ENA]
¡û
>W141561492
JHYM01000005
Gammaproteobacteria
Legionella cherrii DSM 19213 [JHYM]
634503
634578
+
Glu
TTC
[ENA]
¡û
>W09134583
ACUL01000234
Gammaproteobacteria
Legionella drancourtii LLAP12 [ACUL]
19849
19924
+
Glu
TTC
[ENA]
¡û
>W141730018
JNIA01000011
Gammaproteobacteria
Legionella wadsworthii DSM 21896 = ATCC 33877 [JNIA]
45513
45588
+
Glu
TTC
[ENA]
¡û
>W141730019
JNIA01000011
Gammaproteobacteria
Legionella wadsworthii DSM 21896 = ATCC 33877 [JNIA]
45638
45713
+
Glu
TTC
[ENA]
¡û
>W141807396
JPOJ01000001
Gammaproteobacteria
Methylomicrobium agile [JPOJ]
3993538
3993463
-
Glu
TTC
[ENA]
¡û
>W1910377357
FUKI01000132
Gammaproteobacteria
Crenothrix polyspora [FUKI]
66513
66588
+
Glu
TTC
[ENA]
¡û
>W1910377358
FUKI01000132
Gammaproteobacteria
Crenothrix polyspora [FUKI]
66649
66724
+
Glu
TTC
[ENA]
¡û
>W1910377384
FUKJ01000315
Gammaproteobacteria
Crenothrix polyspora [FUKJ]
3728
3653
-
Glu
TTC
[ENA]
¡û
>W1810625309
QHJG01000023
Gammaproteobacteria
Legionella qingyii HEB18 [QHJG]
77435
77510
+
Glu
TTC
[ENA]
¡û
>C151009201
CP006568
Gammaproteobacteria
Candidatus Sodalis pierantonius str. SOPE [CP006568]
4504306
4504231
-
Glu
TTC
[Ensembl]
¡û
>W1511569416
LAJX01000270
Gammaproteobacteria
Methylocucumis oryzae Sn10-6 [LAJX]
558
633
+
Glu
TTC
[ENA]
¡û
>W1511569417
LAJX01000270
Gammaproteobacteria
Methylocucumis oryzae Sn10-6 [LAJX]
693
768
+
Glu
TTC
[ENA]
¡û
>W11164373
AFJF01000009
Gammaproteobacteria
Methylomicrobium album BG8 [AFJF]
157818
157743
-
Glu
TTC
[ENA]
¡û
>W121021438
AGVT01000010
Gammaproteobacteria
Fluoribacter dumoffii Tex-KL [AGVT]
556691
556616
-
Glu
TTC
[ENA]
¡û
>W121021439
AGVT01000010
Gammaproteobacteria
Fluoribacter dumoffii Tex-KL [AGVT]
556566
556491
-
Glu
TTC
[ENA]
¡û
>W121021461
AGVU01000008
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [AGVU]
229795
229870
+
Glu
TTC
[ENA]
¡û
>W121021462
AGVU01000008
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [AGVU]
229920
229995
+
Glu
TTC
[ENA]
¡û
>W1610580086
LBAW01000014
Gammaproteobacteria
Legionella bozemanae [LBAW]
63848
63923
+
Glu
TTC
[ENA]
¡û
>W1610580087
LBAW01000014
Gammaproteobacteria
Legionella bozemanae [LBAW]
63976
64051
+
Glu
TTC
[ENA]
¡û
>W1610580179
LBAY01000030
Gammaproteobacteria
Fluoribacter gormanii [LBAY]
10542
10467
-
Glu
TTC
[ENA]
¡û
>W1610580180
LBAY01000030
Gammaproteobacteria
Fluoribacter gormanii [LBAY]
10417
10342
-
Glu
TTC
[ENA]
¡û
>W1610777428
LNXS01000005
Gammaproteobacteria
Legionella anisa [LNXS]
76
1
-
Glu
TTC
[ENA]
¡û
>W1610777516
LNXU01000013
Gammaproteobacteria
Legionella bozemanae [LNXU]
57894
57819
-
Glu
TTC
[ENA]
¡û
>W1610777517
LNXU01000013
Gammaproteobacteria
Legionella bozemanae [LNXU]
57766
57691
-
Glu
TTC
[ENA]
¡û
>W1610777615
LNXW01000013
Gammaproteobacteria
Legionella cherrii [LNXW]
1354025
1353950
-
Glu
TTC
[ENA]
¡û
>W1610777616
LNXW01000013
Gammaproteobacteria
Legionella cherrii [LNXW]
1353909
1353834
-
Glu
TTC
[ENA]
¡û
>W1610777737
LNXZ01000008
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [LNXZ]
229500
229575
+
Glu
TTC
[ENA]
¡û
>W1610777738
LNXZ01000008
Gammaproteobacteria
Fluoribacter dumoffii NY 23 [LNXZ]
229625
229700
+
Glu
TTC
[ENA]
¡û
>W1610777890
LNYD01000012
Gammaproteobacteria
Fluoribacter gormanii [LNYD]
10311
10236
-
Glu
TTC
[ENA]
¡û
>W1610778408
LNYQ01000013
Gammaproteobacteria
Legionella parisiensis [LNYQ]
1277157
1277232
+
Glu
TTC
[ENA]
¡û
>W1610778724
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
268724
268799
+
Glu
TTC
[ENA]
¡û
>W1610778768
LNYZ01000006
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
59818
59743
-
Glu
TTC
[ENA]
¡û
>W1610778769
LNYZ01000006
Gammaproteobacteria
Legionella steigerwaltii [LNYZ]
59693
59618
-
Glu
TTC
[ENA]
¡û
>W1610778798
LNZA01000001
Gammaproteobacteria
Legionella tucsonensis [LNZA]
1009048
1009123
+
Glu
TTC
[ENA]
¡û
>W1710597849
FTNL01000022
Gammaproteobacteria
Fluoribacter gormanii [FTNL]
72228
72303
+
Glu
TTC
[ENA]
¡û
>W1710597850
FTNL01000022
Gammaproteobacteria
Fluoribacter gormanii [FTNL]
72353
72428
+
Glu
TTC
[ENA]
¡û
>W1710699098
LBAW01000014
Gammaproteobacteria
Legionella bozemanae [LBAW]
63848
63923
+
Glu
TTC
[ENA]
¡û
>W1710699099
LBAW01000014
Gammaproteobacteria
Legionella bozemanae [LBAW]
63976
64051
+
Glu
TTC
[ENA]
¡û
>W1710699191
LBAY01000030
Gammaproteobacteria
Fluoribacter gormanii [LBAY]
10542
10467
-
Glu
TTC
[ENA]
¡û
>W1710699192
LBAY01000030
Gammaproteobacteria
Fluoribacter gormanii [LBAY]
10417
10342
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK