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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25616 (11 seq.)
>W1711404414
MFYK01000010
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
113879
113790
-
Ser
GGA
[ENA]
¡û
>WENV183675502
ORJL011516529
[ORJL] groundwater metagenome; groundwater
258
347
+
Ser
GGA
[ENA]
¢þ
>W1910716955
MFXP01000004
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35 [MFXP]
25709
25620
-
Ser
GGA
[ENA]
¡û
>W1910717208
MFXV01000011
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_52_16 [MFXV]
9434
9345
-
Ser
GGA
[ENA]
¡û
>W1910717235
MFXW01000032
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_53_20 [MFXW]
5161
5250
+
Ser
GGA
[ENA]
¡û
>W1910717578
MFYF01000067
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_12_FULL_53_10 [MFYF]
59344
59433
+
Ser
GGA
[ENA]
¡û
>C161050446
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
972898
972987
+
Ser
GGA
-
¡û
>C161050490
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
973053
973142
+
Ser
GGA
-
¡û
>C161050534
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
972984
973073
+
Ser
GGA
-
¡û
>C161050578
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
972777
972866
+
Ser
GGA
-
¡û
>C161050622
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
973052
973141
+
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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