This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256175 (73 seq.)
>W1710796582
LJSF01000026
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
10281
10356
+
Thr
TGT
[ENA]
¡û
>W1710860629
LMDA01000025
Alphaproteobacteria
Rhizobium sp. Root1212 [LMDA]
170445
170370
-
Thr
TGT
[ENA]
¡û
>W1710868537
LMJD01000029
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
170441
170366
-
Thr
TGT
[ENA]
¡û
>W1710890977
LNCI01000009
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
69201
69126
-
Thr
TGT
[ENA]
¡û
>W1711337999
MBSR01000110
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
4342
4267
-
Thr
TGT
[ENA]
¡û
>W1711338022
MBSS01000012
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
4342
4267
-
Thr
TGT
[ENA]
¡û
>W1711338088
MBST01000034
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
320263
320338
+
Thr
TGT
[ENA]
¡û
>W1711606253
MOOY01000001
Alphaproteobacteria
Pararhizobium arenae MIM27 [MOOY]
595839
595764
-
Thr
TGT
[ENA]
¡û
>W1711695334
MSIT01000018
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
19041
18966
-
Thr
TGT
[ENA]
¡û
>C171064566
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
933693
933618
-
Thr
TGT
-
¡û
>C171101174
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
599591
599516
-
Thr
TGT
-
¡û
>w012784
AAMT01000011
Alphaproteobacteria
Maritimibacter alkaliphilus HTCC2654 [AAMT]
95291
95219
-
Thr
TGT
[ENA]
¡û
>WENV180105642
OAPD01126979
[OAPD] marine metagenome; 2010
320
395
+
Thr
TGT
[ENA]
¢þ
>WENV180106762
OAPF01002343
[OAPF] marine metagenome; ENVO:00002010
411
336
-
Thr
TGT
[ENA]
¢þ
>WENV180112879
OAPP01155021
[OAPP] marine metagenome; Surface water
215
140
-
Thr
TGT
[ENA]
¢þ
>WENV180209612
OBAL01007330
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
343
268
-
Thr
TGT
[ENA]
¢þ
>WENV180273401
OBER01000284
[OBER] marine metagenome; marine
489
414
-
Thr
TGT
[ENA]
¢þ
>WENV180359038
OBNR01000583
[OBNR] marine metagenome; Seawater_00002010_00002149
434
359
-
Thr
TGT
[ENA]
¢þ
>WENV180365158
OBOB01022894
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
364
439
+
Thr
TGT
[ENA]
¢þ
>WENV180365531
OBOC01000839
[OBOC] marine metagenome; ocean water
156
81
-
Thr
TGT
[ENA]
¢þ
>WENV180367664
OBOF01000160
[OBOF] marine metagenome; ENVO:00002010
3876
3951
+
Thr
TGT
[ENA]
¢þ
>WENV180368922
OBOG01007297
[OBOG] marine metagenome; seawater
507
582
+
Thr
TGT
[ENA]
¢þ
>WENV180376270
OBOM01000273
[OBOM] marine metagenome; Seawater
1917
1842
-
Thr
TGT
[ENA]
¢þ
>WENV180381524
OBOS01000846
[OBOS] marine metagenome; ENVO 00002150
2640
2715
+
Thr
TGT
[ENA]
¢þ
>WENV180594615
OCOZ01088023
[OCOZ] marine metagenome; vv
181
106
-
Thr
TGT
[ENA]
¢þ
>WENV180637227
OCRG01003575
[OCRG] marine metagenome; seawater
1040
1115
+
Thr
TGT
[ENA]
¢þ
>W141094765
AVDB01000002
Alphaproteobacteria
Rhodobacteraceae bacterium HIMB11 [AVDB]
132795
132870
+
Thr
TGT
[ENA]
¡û
>WENV181233664
OFET01000033
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
10237
10312
+
Thr
TGT
[ENA]
¢þ
>WENV181233967
OFET01000447
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
125
50
-
Thr
TGT
[ENA]
¢þ
>WENV181234411
OFEU01000105
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
637
562
-
Thr
TGT
[ENA]
¢þ
>WENV181234705
OFEU01001747
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
2165
2090
-
Thr
TGT
[ENA]
¢þ
>W141237292
BBJC01000002
Alphaproteobacteria
Falsirhodobacter sp. alg1 [BBJC]
415503
415428
-
Thr
TGT
[ENA]
¡û
>WENV183708099
PDWI01012898
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5644
5569
-
Thr
TGT
[ENA]
¢þ
>WENV183710476
PDWI01047382
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3352
3427
+
Thr
TGT
[ENA]
¢þ
>WENV183711813
PDWI01081197
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1337
1412
+
Thr
TGT
[ENA]
¢þ
>WENV170366895
CETO01148603
[CETO] marine metagenome genome assembly TARA_122_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
348
273
-
Thr
TGT
[ENA]
¢þ
>WENV170673931
LAZR01035278
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
884
959
+
Thr
TGT
[ENA]
¢þ
>WENV170710067
LNFM01001118
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
43804
43729
-
Thr
TGT
[ENA]
¢þ
>WENV170714088
LNFM01053398
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1596
1671
+
Thr
TGT
[ENA]
¢þ
>WENV170829268
MDSZ01005735
[MDSZ] marine metagenome; seawater
1336
1411
+
Thr
TGT
[ENA]
¢þ
>WENV170933344
MDTG01219085
[MDTG] marine metagenome; seawater
2540
2615
+
Thr
TGT
[ENA]
¢þ
>C191123095
CP034328
Alphaproteobacteria
Tabrizicola piscis K13M18 [CP034328]
128092
128017
-
Thr
TGT
-
¡û
>W141562468
JHZF01000011
Alphaproteobacteria
Pseudooceanicola nanhaiensis DSM 18065 [JHZF]
1168150
1168075
-
Thr
TGT
[ENA]
¡û
>W1910548995
FZOY01000002
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
624891
624816
-
Thr
TGT
[ENA]
¡û
>W1910574842
JQHS01000004
Alphaproteobacteria
Falsirhodobacter deserti W402 [JQHS]
123583
123658
+
Thr
TGT
[ENA]
¡û
>W1911696507
QMEJ01000002
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
373839
373764
-
Thr
TGT
[ENA]
¡û
>W1810090904
PGGO01000029
Alphaproteobacteria
Phyllobacterium brassicacearum STM 196 [PGGO]
44696
44771
+
Thr
TGT
[ENA]
¡û
>W1810268907
PRDS01000009
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
75806
75731
-
Thr
TGT
[ENA]
¡û
>W1810346616
PVBT01000001
Alphaproteobacteria
Phyllobacterium myrsinacearum DSM 5892 [PVBT]
985094
985169
+
Thr
TGT
[ENA]
¡û
>W1810351346
PVEP01000001
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
133810
133885
+
Thr
TGT
[ENA]
¡û
>W1810596846
QGGV01000003
Alphaproteobacteria
Silicimonas algicola DSM 103371 [QGGV]
365680
365755
+
Thr
TGT
[ENA]
¡û
>W1810596894
QGGW01000010
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
968
893
-
Thr
TGT
[ENA]
¡û
>W1810608807
QGTP01000001
Alphaproteobacteria
Phyllobacterium myrsinacearum IAM 13584 [QGTP]
663827
663902
+
Thr
TGT
[ENA]
¡û
>W1810692935
QLKY01000003
Alphaproteobacteria
Phyllobacterium myrsinacearum HAMBI_1992 [QLKY]
430534
430459
-
Thr
TGT
[ENA]
¡û
>C151006156
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
3133465
3133390
-
Thr
TGT
[Ensembl]
¡û
>C11111846
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
388406
388331
-
Thr
TGT
[Ensembl]
¡û
>C11111898
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
793071
792996
-
Thr
TGT
[Ensembl]
¡û
>W1511694092
LGAP01000001
Alphaproteobacteria
Ensifer adhaerens SD006 [LGAP]
356868
356943
+
Thr
TGT
[ENA]
¡û
>C161043376
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
2417245
2417170
-
Thr
TGT
[Ensembl]
¡û
>C161047290
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
779628
779553
-
Thr
TGT
-
¡û
>C161100016
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
779481
779406
-
Thr
TGT
-
¡û
>W121085104
AKIZ01000002
Alphaproteobacteria
Phyllobacterium sp. YR531 [AKIZ]
102165
102090
-
Thr
TGT
[ENA]
¡û
>W1610092494
CYPR01000161
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
743
668
-
Thr
TGT
[ENA]
¡û
>WENV069441
AACY023766631
Marine microbial communities from Global Ocean Sampling (GOS)
284
207
-
Thr
TGT
[ENA]
>W1610660539
LJSF01000026
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
10281
10356
+
Thr
TGT
[ENA]
¡û
>W1610722975
LMDA01000025
Alphaproteobacteria
Rhizobium sp. Root1212 [LMDA]
170445
170370
-
Thr
TGT
[ENA]
¡û
>W1610730883
LMJD01000029
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
170441
170366
-
Thr
TGT
[ENA]
¡û
>W1610751373
LNCI01000009
Alphaproteobacteria
Tropicimonas marinistellae SF-16 [LNCI]
69201
69126
-
Thr
TGT
[ENA]
¡û
>W1611066927
MBSR01000110
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
4342
4267
-
Thr
TGT
[ENA]
¡û
>W1611066950
MBSS01000012
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
4342
4267
-
Thr
TGT
[ENA]
¡û
>W1710015593
AQQU01000008
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
18493
18418
-
Thr
TGT
[ENA]
¡û
>W1710095749
CYPR01000161
Alphaproteobacteria
Jannaschia seosinensis [CYPR]
743
668
-
Thr
TGT
[ENA]
¡û
>W1710514174
FNAT01000001
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
133454
133529
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK