This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256195 (42 seq.)
>W1711293860
LZYZ01000001
Bacillota
Clostridium saccharobutylicum [LZYZ]
1085814
1085889
+
Pro
TGG
[ENA]
¡û
>W1711293919
LZYZ01000005
Bacillota
Clostridium saccharobutylicum [LZYZ]
476212
476287
+
Pro
TGG
[ENA]
¡û
>W1711293922
LZYZ01000005
Bacillota
Clostridium saccharobutylicum [LZYZ]
476651
476726
+
Pro
TGG
[ENA]
¡û
>W1711293942
LZZA01000016
Bacillota
Clostridium saccharobutylicum [LZZA]
1023
948
-
Pro
TGG
[ENA]
¡û
>W1711293949
LZZA01000043
Bacillota
Clostridium saccharobutylicum [LZZA]
3789
3864
+
Pro
TGG
[ENA]
¡û
>W1711294006
LZZA01000139
Bacillota
Clostridium saccharobutylicum [LZZA]
603
528
-
Pro
TGG
[ENA]
¡û
>W1711294009
LZZA01000139
Bacillota
Clostridium saccharobutylicum [LZZA]
171
96
-
Pro
TGG
[ENA]
¡û
>W1711294524
LZZM01000055
Bacillota
Clostridium puniceum [LZZM]
1866
1941
+
Pro
TGG
[ENA]
¡û
>W1711294527
LZZM01000055
Bacillota
Clostridium puniceum [LZZM]
2292
2367
+
Pro
TGG
[ENA]
¡û
>W1711320468
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
21808
21883
+
Pro
TGG
[ENA]
¡û
>W1711902841
MZGT01000004
Bacillota
Clostridium chromiireducens [MZGT]
5894
5819
-
Pro
TGG
[ENA]
¡û
>W1711902860
MZGT01000017
Bacillota
Clostridium chromiireducens [MZGT]
11128
11053
-
Pro
TGG
[ENA]
¡û
>W1711902863
MZGT01000017
Bacillota
Clostridium chromiireducens [MZGT]
10709
10634
-
Pro
TGG
[ENA]
¡û
>C171045579
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
425056
425131
+
Pro
TGG
-
¡û
>C171045582
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
425495
425570
+
Pro
TGG
-
¡û
>C171045618
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
4869324
4869399
+
Pro
TGG
-
¡û
>C171045730
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
425056
425131
+
Pro
TGG
-
¡û
>C171045733
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
425495
425570
+
Pro
TGG
-
¡û
>C171045775
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
4869701
4869776
+
Pro
TGG
-
¡û
>C171045899
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
439135
439210
+
Pro
TGG
-
¡û
>C171045902
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
439574
439649
+
Pro
TGG
-
¡û
>C171045944
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
4711198
4711273
+
Pro
TGG
-
¡û
>C171045984
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
425056
425131
+
Pro
TGG
-
¡û
>C171045987
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
425495
425570
+
Pro
TGG
-
¡û
>C171046029
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
4869934
4870009
+
Pro
TGG
-
¡û
>WENV180315167
OBKH01029671
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
199
124
-
Pro
TGG
[ENA]
¢þ
>WENV180315419
OBKH01087701
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
33
108
+
Pro
TGG
[ENA]
¢þ
>WENV182618689
OJKF01012896
[OJKF] metagenome; faeces
469
394
-
Pro
TGG
[ENA]
¢þ
>WENV170003569
AGTN01379433
[AGTN] bioreactor metagenome; poplar biomass
219
144
-
Pro
TGG
[ENA]
¢þ
>WENV170660325
JXWT01070363
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
313
388
+
Pro
TGG
[ENA]
¢þ
>C181176724
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1393523
1393598
+
Pro
TGG
-
¡û
>C181176727
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1393927
1394002
+
Pro
TGG
-
¡û
>W141560237
JHXK01000018
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
78
3
-
Pro
TGG
[ENA]
¡û
>C141007591
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
425057
425132
+
Pro
TGG
[Ensembl]
¡û
>C141007594
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
425496
425571
+
Pro
TGG
[Ensembl]
¡û
>C141007636
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
4869932
4870007
+
Pro
TGG
[Ensembl]
¡û
>W1911766179
QXDJ01000001
Bacillota
Clostridium chromiireducens C1 [QXDJ]
1291656
1291731
+
Pro
TGG
[ENA]
¡û
>W1911766200
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
234605
234680
+
Pro
TGG
[ENA]
¡û
>W1911766203
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
235025
235100
+
Pro
TGG
[ENA]
¡û
>W11176321
AFWX01000002
Bacillota
Clostridium sp. DL-VIII [AFWX]
3558435
3558510
+
Pro
TGG
[ENA]
¡û
>W1610030591
AYXL01000016
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
11079
11154
+
Pro
TGG
[ENA]
¡û
>W1710027714
AYXL01000016
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
11079
11154
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK