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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256283 (38 seq.)
>W131221726
AUAR01000014
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
11386
11461
+
Phe
GAA
[ENA]
¡û
>W131221727
AUAR01000014
Thermodesulfobacteriota
Desulfomicrobium escambiense DSM 10707 [AUAR]
11623
11698
+
Phe
GAA
[ENA]
¡û
>W131222846
AUBP01000006
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
18969
18894
-
Phe
GAA
[ENA]
¡û
>W131222847
AUBP01000006
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
18829
18754
-
Phe
GAA
[ENA]
¡û
>W131224785
AUDB01000002
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
450432
450507
+
Phe
GAA
[ENA]
¡û
>W131224786
AUDB01000002
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
450700
450775
+
Phe
GAA
[ENA]
¡û
>WENV180042601
LQAF01011182
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
270
345
+
Phe
GAA
[ENA]
¢þ
>WENV180346812
OBLN01316583
[OBLN] sediment metagenome; sediment
107
182
+
Phe
GAA
[ENA]
¢þ
>W141278233
JAFE01000004
Thermodesulfobacteriota
Desulfonatronum lacustre DSM 10312 [JAFE]
578949
578874
-
Phe
GAA
[ENA]
¡û
>WENV183512123
OMKS01000056
[OMKS] sediment metagenome; hot spring sediment
60381
60456
+
Phe
GAA
[ENA]
¢þ
>WENV183512174
OMKS01000095
[OMKS] sediment metagenome; hot spring sediment
69612
69687
+
Phe
GAA
[ENA]
¢þ
>WENV183577179
OOCJ01021151
[OOCJ] human gut metagenome; human gut
987
912
-
Phe
GAA
[ENA]
¢þ
>WENV183706046
PDWI01002978
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19536
19461
-
Phe
GAA
[ENA]
¢þ
>WENV183747594
PPCM01007132
[PPCM] marine sediment metagenome; marine sediment
1106
1031
-
Phe
GAA
[ENA]
¢þ
>WENV183747663
PPCM01014887
[PPCM] marine sediment metagenome; marine sediment
934
1009
+
Phe
GAA
[ENA]
¢þ
>WENV170657672
JTFP01008000
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
119
194
+
Phe
GAA
[ENA]
¢þ
>WENV170658681
JTFP01178838
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
250
175
-
Phe
GAA
[ENA]
¢þ
>W09108780
ABTP01000001
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
1029789
1029864
+
Phe
GAA
[ENA]
¡û
>W09108781
ABTP01000001
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [ABTP]
1030045
1030120
+
Phe
GAA
[ENA]
¡û
>W09117972
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
461651
461726
+
Phe
GAA
[ENA]
¡û
>W09117980
ACCN01000002
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
464353
464278
-
Phe
GAA
[ENA]
¡û
>W141804607
JPIK01000023
Thermodesulfobacteriota
Desulfonatronum thiodismutans [JPIK]
79282
79357
+
Phe
GAA
[ENA]
¡û
>C141011899
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1121231
1121306
+
Phe
GAA
-
¡û
>C141011900
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1121499
1121574
+
Phe
GAA
-
¡û
>C09104239
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
4196943
4197018
+
Phe
GAA
[Ensembl]
¡û
>C09104240
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
4199645
4199570
-
Phe
GAA
[Ensembl]
¡û
>W1810445551
PZKN01000008
Thermodesulfobacteriota
Desulfonatronum sp. SC1 [PZKN]
32633
32558
-
Phe
GAA
[ENA]
¡û
>C10104965
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
3180313
3180388
+
Phe
GAA
[Ensembl]
¡û
>C10104966
CP001629
Thermodesulfobacteriota
Desulfomicrobium baculatum DSM 4028 [CP001629]
3180568
3180643
+
Phe
GAA
[Ensembl]
¡û
>W1511534044
JYNO01000001
Thermodesulfobacteriota
Desulfonatronum thioautotrophicum ASO4-1 [JYNO]
1067387
1067462
+
Phe
GAA
[ENA]
¡û
>C161069020
CP014230
Thermodesulfobacteriota
Desulfomicrobium orale DSM 12838 [CP014230]
790011
790086
+
Phe
GAA
[Ensembl]
¡û
>C131018081
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1121231
1121306
+
Phe
GAA
[Ensembl]
¡û
>C131018082
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1121499
1121574
+
Phe
GAA
[Ensembl]
¡û
>W1710509937
FMXO01000021
Thermodesulfobacteriota
Desulfonatronum thiosulfatophilum [FMXO]
61617
61692
+
Phe
GAA
[ENA]
¡û
>W1710566341
FORX01000003
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
28932
29007
+
Phe
GAA
[ENA]
¡û
>W1710566342
FORX01000003
Thermodesulfobacteriota
Desulfomicrobium apsheronum [FORX]
29201
29276
+
Phe
GAA
[ENA]
¡û
>W1710568363
FOTO01000003
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
197786
197711
-
Phe
GAA
[ENA]
¡û
>W1710568364
FOTO01000003
Thermodesulfobacteriota
Desulfomicrobium norvegicum [FOTO]
197519
197444
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK