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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256304 (80 seq.)
>W131215988
ATVL01000010
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
570733
570808
+
Lys
TTT
[ENA]
¡û
>W131215997
ATVL01000012
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
267276
267351
+
Lys
TTT
[ENA]
¡û
>W1711377575
MDZA01000456
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
18841
18766
-
Lys
TTT
[ENA]
¡û
>W1711377602
MDZB01000103
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
17342
17269
-
Lys
TTT
[ENA]
¡û
>W1711377649
MDZC01000088
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
7737
7810
+
Lys
TTT
[ENA]
¡û
>W1711502436
MKSR01000030
Bacteroidota
Dyadobacter sp. 50-39 [MKSR]
94406
94333
-
Lys
TTT
[ENA]
¡û
>W1711502441
MKSR01000040
Bacteroidota
Dyadobacter sp. 50-39 [MKSR]
12785
12712
-
Lys
TTT
[ENA]
¡û
>W1711506289
MKWH01000006
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
214516
214441
-
Lys
TTT
[ENA]
¡û
>W1711506311
MKWH01000034
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
137752
137827
+
Lys
TTT
[ENA]
¡û
>W1711506326
MKWH01000048
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
18365
18292
-
Lys
TTT
[ENA]
¡û
>W1711506339
MKWH01000064
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
47013
46938
-
Lys
TTT
[ENA]
¡û
>W1711712737
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
1509139
1509214
+
Lys
TTT
[ENA]
¡û
>W1711712742
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
2254717
2254792
+
Lys
TTT
[ENA]
¡û
>W1711712753
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
415646
415571
-
Lys
TTT
[ENA]
¡û
>W1711712777
MTCM01000004
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
91869
91944
+
Lys
TTT
[ENA]
¡û
>W1711767900
MVBC01000024
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
20004
19931
-
Lys
TTT
[ENA]
¡û
>W131087898
AODQ01000028
Bacteroidota
Cesiribacter andamanensis AMV16 [AODQ]
41939
41864
-
Lys
TTT
[ENA]
¡û
>W131087910
AODQ01000092
Bacteroidota
Cesiribacter andamanensis AMV16 [AODQ]
73
1
-
Lys
TTT
[ENA]
¡û
>W131179038
ARMB01000053
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
229560
229485
-
Lys
TTT
[ENA]
¡û
>W131179041
ARMB01000053
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
229050
228977
-
Lys
TTT
[ENA]
¡û
>W131180712
ARNI01000009
Bacteroidota
Dyadobacter beijingensis DSM 21582 [ARNI]
1189727
1189800
+
Lys
TTT
[ENA]
¡û
>W131180731
ARNI01000013
Bacteroidota
Dyadobacter beijingensis DSM 21582 [ARNI]
824
751
-
Lys
TTT
[ENA]
¡û
>W131220000
ATZA01000003
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
55015
54940
-
Lys
TTT
[ENA]
¡û
>W131220001
ATZA01000003
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
54013
53938
-
Lys
TTT
[ENA]
¡û
>WENV180691891
OCZS010255106
[OCZS] soil metagenome; soil
274
201
-
Lys
TTT
[ENA]
¢þ
>WENV181295579
OFHI01072711
[OFHI] soil metagenome; Clay
211
284
+
Lys
TTT
[ENA]
¢þ
>WENV181365415
OFPQ01001121
[OFPQ] sediment metagenome; Lake sediment
157
84
-
Lys
TTT
[ENA]
¢þ
>WENV181841277
OGVR01004467
[OGVR] freshwater metagenome; freshwater
236
163
-
Lys
TTT
[ENA]
¢þ
>WENV181841278
OGVR01004467
[OGVR] freshwater metagenome; freshwater
137
64
-
Lys
TTT
[ENA]
¢þ
>WENV181844170
OGVV01016001
[OGVV] freshwater metagenome; freshwater
514
441
-
Lys
TTT
[ENA]
¢þ
>WENV183726758
PJTO01000132
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
22755
22682
-
Lys
TTT
[ENA]
¢þ
>WENV183726759
PJTO01000132
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
276
203
-
Lys
TTT
[ENA]
¢þ
>WENV183727531
PJTP01000012
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
270362
270435
+
Lys
TTT
[ENA]
¢þ
>WENV183727609
PJTP01000031
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
169
96
-
Lys
TTT
[ENA]
¢þ
>WENV183727622
PJTP01000044
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
330
257
-
Lys
TTT
[ENA]
¢þ
>WENV183727734
PJTP01000127
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
5942
6015
+
Lys
TTT
[ENA]
¢þ
>WENV183728116
PJTP01037739
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
430
357
-
Lys
TTT
[ENA]
¢þ
>WENV183728593
PJTQ01000166
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
22755
22682
-
Lys
TTT
[ENA]
¢þ
>WENV183728594
PJTQ01000166
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
276
203
-
Lys
TTT
[ENA]
¢þ
>WENV183737273
PJUD01002414
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5701
5774
+
Lys
TTT
[ENA]
¢þ
>WENV183739960
PJUF01000101
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
22755
22682
-
Lys
TTT
[ENA]
¢þ
>WENV183739961
PJUF01000101
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
276
203
-
Lys
TTT
[ENA]
¢þ
>WENV170713165
LNFM01025344
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1812
1737
-
Lys
TTT
[ENA]
¢þ
>WENV170984490
MWVV01314172
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
328
403
+
Lys
TTT
[ENA]
¢þ
>WENV170996348
MWWF01229815
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
164
237
+
Lys
TTT
[ENA]
¢þ
>C181175114
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
1846739
1846666
-
Lys
TTT
-
¡û
>C191157527
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2563833
2563906
+
Lys
TTT
-
¡û
>C191157545
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2941145
2941072
-
Lys
TTT
-
¡û
>W09108946
ABTS01000003
Bacteroidota
Dyadobacter fermentans DSM 18053 [ABTS]
37681
37754
+
Lys
TTT
[ENA]
¡û
>W09108949
ABTS01000005
Bacteroidota
Dyadobacter fermentans DSM 18053 [ABTS]
18420
18493
+
Lys
TTT
[ENA]
¡û
>W141734702
JNLX01000034
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
66649
66574
-
Lys
TTT
[ENA]
¡û
>W1910378063
FUKX01000030
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
114
41
-
Lys
TTT
[ENA]
¡û
>W1910378083
FUKX01000041
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
108899
108972
+
Lys
TTT
[ENA]
¡û
>W1910378101
FUKX01000060
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
48221
48148
-
Lys
TTT
[ENA]
¡û
>W1910378102
FUKX01000060
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
23500
23427
-
Lys
TTT
[ENA]
¡û
>W1910378103
FUKX01000060
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
8019
7946
-
Lys
TTT
[ENA]
¡û
>W1910664342
MCAQ01000001
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
523937
523864
-
Lys
TTT
[ENA]
¡û
>W1910664350
MCAQ01000003
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
287754
287681
-
Lys
TTT
[ENA]
¡û
>W1910664369
MCAQ01000012
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
463936
463863
-
Lys
TTT
[ENA]
¡û
>W1910664374
MCAQ01000023
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
219441
219514
+
Lys
TTT
[ENA]
¡û
>SRA1001969
SRR001308.155375
Metagenomic characterization of a wastewater treatment plant (SRP000180)
109
182
+
Lys
TTT
[SRA]
>SRA1002161
SRR001308.276784
Metagenomic characterization of a wastewater treatment plant (SRP000180)
4
77
+
Lys
TTT
[SRA]
>W1810089881
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
2949505
2949430
-
Lys
TTT
[ENA]
¡û
>W1810089900
PGFA01000004
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
589327
589402
+
Lys
TTT
[ENA]
¡û
>W1810625892
QHKM01000003
Bacteroidota
Hymenobacter edaphi NL [QHKM]
32095
32168
+
Lys
TTT
[ENA]
¡û
>W1810625917
QHKM01000009
Bacteroidota
Hymenobacter edaphi NL [QHKM]
1995
1922
-
Lys
TTT
[ENA]
¡û
>SRA1016461
SRR023846.511042
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
113
+
Lys
TTT
[SRA]
>W1511582935
LATM01000002
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
275326
275401
+
Lys
TTT
[ENA]
¡û
>C161003246
CP004371
Bacteroidota
Flammeovirgaceae bacterium 311 [CP004371]
4860601
4860676
+
Lys
TTT
[Ensembl]
¡û
>C161070740
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
3088146
3088071
-
Lys
TTT
[Ensembl]
¡û
>W1710538680
FNUT01000002
Bacteroidota
Sphingobacterium lactis [FNUT]
406533
406608
+
Lys
TTT
[ENA]
¡û
>W1710538688
FNUT01000005
Bacteroidota
Sphingobacterium lactis [FNUT]
92138
92065
-
Lys
TTT
[ENA]
¡û
>W1710562180
FOOT01000017
Bacteroidota
Pontibacter chinhatensis [FOOT]
28140
28215
+
Lys
TTT
[ENA]
¡û
>W1710562181
FOOT01000017
Bacteroidota
Pontibacter chinhatensis [FOOT]
28355
28428
+
Lys
TTT
[ENA]
¡û
>W1710573739
FOXS01000003
Bacteroidota
Hymenobacter arizonensis [FOXS]
284503
284578
+
Lys
TTT
[ENA]
¡û
>W1710587452
FQYN01000001
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
27214
27139
-
Lys
TTT
[ENA]
¡û
>W1710587463
FQYN01000003
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
397659
397584
-
Lys
TTT
[ENA]
¡û
>W1710603629
FUZF01000003
Bacteroidota
Sphingobacterium nematocida [FUZF]
40775
40700
-
Lys
TTT
[ENA]
¡û
>W1710603630
FUZF01000003
Bacteroidota
Sphingobacterium nematocida [FUZF]
35544
35469
-
Lys
TTT
[ENA]
¡û
>W1710603645
FUZF01000011
Bacteroidota
Sphingobacterium nematocida [FUZF]
106870
106945
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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