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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256335 (87 seq.)
>W131171889
ARGO01000018
Bacillota
Paenibacillus sanguinis 2301083 = DSM 16941 [ARGO]
59097
59023
-
Val
GAC
[ENA]
¡û
>W131179936
ARMT01000069
Bacillota
Paenibacillus fonticola DSM 21315 [ARMT]
93633
93557
-
Val
GAC
[ENA]
¡û
>W131195998
ASSZ01000011
Bacillota
Paenibacillus barengoltzii G22 [ASSZ]
395501
395427
-
Val
GAC
[ENA]
¡û
>W1711252491
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
265097
265023
-
Val
GAC
[ENA]
¡û
>W131235812
AULW01000001
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
179555
179481
-
Val
GAC
[ENA]
¡û
>W1711677542
MRTP01000002
Bacillota
Paenibacillus rhizosphaerae [MRTP]
328567
328495
-
Val
GAC
[ENA]
¡û
>W1711677678
MRTR01000002
Bacillota
Paenibacillus macerans [MRTR]
255822
255748
-
Val
GAC
[ENA]
¡û
>W1711679797
MRVI01000001
Bacillota
Paenibacillus ihbetae IHBB 9951 [MRVI]
275568
275492
-
Val
GAC
[ENA]
¡û
>W131251931
CBLK010000053
Bacillota
Paenibacillus antibioticophila GD11 [CBLK]
150500
150572
+
Val
GAC
[ENA]
¡û
>W131176630
ARKE01000053
Bacillota
Paenibacillus daejeonensis DSM 15491 [ARKE]
559979
559907
-
Val
GAC
[ENA]
¡û
>W131234932
AULE01000012
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
243342
243417
+
Val
GAC
[ENA]
¡û
>W131235879
AULX01000002
Bacillota
Paenibacillus pinihumi DSM 23905 [AULX]
627807
627879
+
Val
GAC
[ENA]
¡û
>W141080275
ATMS01000085
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
301058
300983
-
Val
GAC
[ENA]
¡û
>W141080280
ATMT01000007
Bacillota
Paenibacillus alvei TS-15 [ATMT]
20260
20185
-
Val
GAC
[ENA]
¡û
>W141231744
BAUO01000001
Bacillota
Paenibacillus sp. JCM 10914 [BAUO]
349845
349771
-
Val
GAC
[ENA]
¡û
>W141233564
BAVZ01000002
Bacillota
Paenibacillus pini JCM 16418 [BAVZ]
387647
387723
+
Val
GAC
[ENA]
¡û
>W141276276
JADQ01000063
Bacillota
Paenibacillus sp. J14 [JADQ]
22921
22995
+
Val
GAC
[ENA]
¡û
>W141277403
JAEO01000023
Bacillota
Bacillus sp. J13 [JAEO]
670
594
-
Val
GAC
[ENA]
¡û
>WENV183730050
PJTR01000422
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
16251
16177
-
Val
GAC
[ENA]
¢þ
>W141462440
JFHT01000216
Bacillota
Paenibacillus darwinianus [JFHT]
9498
9573
+
Val
GAC
[ENA]
¡û
>W141462454
JFHU01000129
Bacillota
Paenibacillus darwinianus [JFHU]
26936
27011
+
Val
GAC
[ENA]
¡û
>W141462474
JFHV01000107
Bacillota
Paenibacillus darwinianus [JFHV]
9495
9570
+
Val
GAC
[ENA]
¡û
>W09125316
ACIH01000262
Bacillota
Paenibacillus sp. oral taxon 786 oral taxon 786 str. D14 [ACIH]
3983
4057
+
Val
GAC
[ENA]
¡û
>C181021460
CP016809
Bacillota
Paenibacillus ihbetae IHBB 9852 [CP016809]
1189861
1189936
+
Val
GAC
-
¡û
>C191122464
CP034248
Bacillota
Paenibacillus lentus DSM 25539 [CP034248]
2905202
2905128
-
Val
GAC
-
¡û
>W141702830
JMLT01000003
Bacillota
Paenibacillus sp. UNC217MF [JMLT]
330625
330550
-
Val
GAC
[ENA]
¡û
>W141711638
JMQA01000021
Bacillota
Paenibacillus macerans [JMQA]
47057
46983
-
Val
GAC
[ENA]
¡û
>W1910007053
BBYF01000003
Bacillota
Paenibacillus sp. NAIST15-1 [BBYF]
554582
554507
-
Val
GAC
[ENA]
¡û
>W1910067481
BFBX01000083
Bacillota
Paenibacillus sp. 598K [BFBX]
82327
82255
-
Val
GAC
[ENA]
¡û
>W1910126268
BGML01000009
Bacillota
Paenibacillus macerans DSM 24746 [BGML]
158827
158902
+
Val
GAC
[ENA]
¡û
>W1910126350
BGMM01000009
Bacillota
Paenibacillus macerans JCM 17693 [BGMM]
148079
148004
-
Val
GAC
[ENA]
¡û
>W1910154567
BILV01000059
Bacillota
Paenibacillus barengoltzii NBRC 101215 [BILV]
34405
34479
+
Val
GAC
[ENA]
¡û
>W1910154904
BIMD01000006
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
72477
72551
+
Val
GAC
[ENA]
¡û
>W1910155030
BIMG01000040
Bacillota
Paenibacillus macerans NBRC 15307 [BIMG]
38851
38777
-
Val
GAC
[ENA]
¡û
>W1910155229
BIMK01000016
Bacillota
Paenibacillus chibensis NBRC 15958 [BIMK]
143364
143438
+
Val
GAC
[ENA]
¡û
>W1910155324
BIMM01000035
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
34933
35007
+
Val
GAC
[ENA]
¡û
>W1910340322
FTLT01000023
Bacillota
Paenibacillus bouchesdurhonensis Marseille-P3071 [FTLT]
128696
128622
-
Val
GAC
[ENA]
¡û
>W1910505885
FYER01000001
Bacillota
Paenibacillus aquistagni St-s [FYER]
867622
867547
-
Val
GAC
[ENA]
¡û
>W1910663980
MBRK01000001
Bacillota
Paenibacillus sp. SSG-1 [MBRK]
4013565
4013637
+
Val
GAC
[ENA]
¡û
>W1910692540
MDDO01000011
Bacillota
Paenibacillus aceti L14 [MDDO]
423524
423598
+
Val
GAC
[ENA]
¡û
>W1910891877
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
3232267
3232193
-
Val
GAC
[ENA]
¡û
>W1911075491
NMUQ01000001
Bacillota
Paenibacillus herberti R33 [NMUQ]
730993
731067
+
Val
GAC
[ENA]
¡û
>W1911144763
NPBY01000006
Bacillota
Paenibacillus campinasensis 7537-G1 [NPBY]
11134
11059
-
Val
GAC
[ENA]
¡û
>W1911178120
NQLZ01000005
Bacillota
Paenibacillus sp. 7541 [NQLZ]
416061
415986
-
Val
GAC
[ENA]
¡û
>W1911178877
NQMO01000008
Bacillota
Paenibacillus sp. XY044 [NQMO]
219794
219722
-
Val
GAC
[ENA]
¡û
>W1911533317
OKQQ01000008
Bacillota
Paenibacillus faecalis Marseille-P3787 [OKQQ]
362493
362419
-
Val
GAC
[ENA]
¡û
>W1911779658
QXQA01000002
Bacillota
Paenibacillus nanensis DSM 22867 [QXQA]
109137
109063
-
Val
GAC
[ENA]
¡û
>W1810050182
PCZT01000012
Bacillota
Paenibacillus sp. AR247 [PCZT]
306736
306664
-
Val
GAC
[ENA]
¡û
>W1810679754
QKRB01000055
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
70318
70390
+
Val
GAC
[ENA]
¡û
>W1810760001
QPJW01000001
Bacillota
Fontibacillus phaseoli CECT 8333 [QPJW]
586526
586600
+
Val
GAC
[ENA]
¡û
>W1810787551
QRDU01000001
Bacillota
Paenibacillus sp. VMFN-D1 [QRDU]
371744
371672
-
Val
GAC
[ENA]
¡û
>C151075890
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
562793
562865
+
Val
GAC
[Ensembl]
¡û
>C151075923
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
4398626
4398551
-
Val
GAC
[Ensembl]
¡û
>W10126251
AEDD01000001
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
411969
411895
-
Val
GAC
[ENA]
¡û
>W1511185348
JMDX01000385
Bacillota
Paenibacillus sp. E194 [JMDX]
1651
1726
+
Val
GAC
[ENA]
¡û
>W1511352041
JRNV01000005
Bacillota
Paenibacillus sp. P1XP2 [JRNV]
29350
29278
-
Val
GAC
[ENA]
¡û
>W11133512
AEDD01000001
Bacillota
Paenibacillus curdlanolyticus YK9 [AEDD]
411969
411895
-
Val
GAC
[ENA]
¡û
>W1511541302
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
1490702
1490628
-
Val
GAC
[ENA]
¡û
>W1511586969
LAZU01000037
Bacillota
Paenibacillus sp. DMB20 [LAZU]
423456
423531
+
Val
GAC
[ENA]
¡û
>W11178705
AGFE01000003
Bacillota
Thermobacillus composti KWC4 [AGFE]
205819
205744
-
Val
GAC
[ENA]
¡û
>W11180970
AGIP01000004
Bacillota
Paenibacillus lactis 154 [AGIP]
379583
379509
-
Val
GAC
[ENA]
¡û
>C161058327
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
2231059
2231134
+
Val
GAC
[Ensembl]
¡û
>W1610043301
BAZR01000001
Bacillota
Paenibacillus sp. JCM 10914 [BAZR]
349845
349771
-
Val
GAC
[ENA]
¡û
>W1610043423
BAZT01000002
Bacillota
Paenibacillus pini JCM 16418 [BAZT]
387647
387723
+
Val
GAC
[ENA]
¡û
>W1610047469
BBDI01000003
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
14016
13944
-
Val
GAC
[ENA]
¡û
>W1610097867
CYXK01000015
Bacillota
Paenibacillus ihumii AT5 [CYXK]
547047
546973
-
Val
GAC
[ENA]
¡û
>W1610164005
FAUP01000017
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
547712
547786
+
Val
GAC
[ENA]
¡û
>W1610164056
FAUQ01000023
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
703564
703639
+
Val
GAC
[ENA]
¡û
>W121122925
AMBZ01000004
Bacillota
Paenibacillus alvei DSM 29 [AMBZ]
577752
577827
+
Val
GAC
[ENA]
¡û
>W1610207124
FCOQ01000018
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
622280
622206
-
Val
GAC
[ENA]
¡û
>C131002453
CP003255
Bacillota
Thermobacillus composti KWC4 [CP003255]
2327899
2327974
+
Val
GAC
[Ensembl]
¡û
>W1610501444
FLKE01000009
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
270750
270676
-
Val
GAC
[ENA]
¡û
>W1611017279
LYPA01000064
Bacillota
Paenibacillus oryzae [LYPA]
265097
265023
-
Val
GAC
[ENA]
¡û
>W1710040461
BAZR01000001
Bacillota
Paenibacillus sp. JCM 10914 [BAZR]
349845
349771
-
Val
GAC
[ENA]
¡û
>W1710040583
BAZT01000002
Bacillota
Paenibacillus pini JCM 16418 [BAZT]
387647
387723
+
Val
GAC
[ENA]
¡û
>W1710044074
BBDI01000003
Bacillota
Paenibacillus pinihumi DSM 23905 = JCM 16419 [BBDI]
14016
13944
-
Val
GAC
[ENA]
¡û
>W1710100622
CYXK01000015
Bacillota
Paenibacillus ihumii AT5 [CYXK]
547047
546973
-
Val
GAC
[ENA]
¡û
>W1710165672
FAUP01000017
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
547712
547786
+
Val
GAC
[ENA]
¡û
>W1710165723
FAUQ01000023
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
703564
703639
+
Val
GAC
[ENA]
¡û
>W1710207818
FCOQ01000018
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
622280
622206
-
Val
GAC
[ENA]
¡û
>W1710494914
FLKE01000009
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
270750
270676
-
Val
GAC
[ENA]
¡û
>W1710514506
FNAZ01000003
Bacillota
Paenibacillus sp. cl6col [FNAZ]
452508
452433
-
Val
GAC
[ENA]
¡û
>W1710595413
FTLY01000001
Bacillota
Paenibacillus sp. RU4X [FTLY]
1078364
1078438
+
Val
GAC
[ENA]
¡û
>W1710597311
FTND01000001
Bacillota
Paenibacillus sp. RU4T [FTND]
1078364
1078438
+
Val
GAC
[ENA]
¡û
>W1710607444
FXAB01000056
Bacillota
Paenibacillus barengoltzii J6 [FXAB]
29890
29964
+
Val
GAC
[ENA]
¡û
>W1710607622
FXAE01000090
Bacillota
Paenibacillus barengoltzii J12 [FXAE]
2626
2552
-
Val
GAC
[ENA]
¡û
>W1710608567
FXAZ01000001
Bacillota
Paenibacillus aquistagni 11 [FXAZ]
475938
476013
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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