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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256481 (23 seq.)
>W1711361642
MDLK01000011
Bacillota
Brochothrix thermosphacta DSM 20171 = FSL F6-1036 [MDLK]
965
893
-
Thr
TGT
[ENA]
¡û
>W1711361751
MDLL01000029
Bacillota
Brochothrix thermosphacta [MDLL]
201
129
-
Thr
TGT
[ENA]
¡û
>W1711361798
MDLM01000006
Bacillota
Brochothrix thermosphacta [MDLM]
201
129
-
Thr
TGT
[ENA]
¡û
>W1711361874
MDLN01000006
Bacillota
Brochothrix thermosphacta [MDLN]
201
129
-
Thr
TGT
[ENA]
¡û
>W1711361886
MDLN01000007
Bacillota
Brochothrix thermosphacta [MDLN]
1181
1253
+
Thr
TGT
[ENA]
¡û
>W1711361998
MDLO01000029
Bacillota
Brochothrix thermosphacta [MDLO]
201
129
-
Thr
TGT
[ENA]
¡û
>W1711362086
MDLP01000020
Bacillota
Brochothrix thermosphacta [MDLP]
966
894
-
Thr
TGT
[ENA]
¡û
>W1711362187
MDLQ01000151
Bacillota
Brochothrix thermosphacta [MDLQ]
201
129
-
Thr
TGT
[ENA]
¡û
>W1711362228
MDLR01000133
Bacillota
Brochothrix thermosphacta [MDLR]
966
894
-
Thr
TGT
[ENA]
¡û
>W1711362333
MDLS01000112
Bacillota
Brochothrix thermosphacta [MDLS]
1288
1360
+
Thr
TGT
[ENA]
¡û
>W1711362349
MDLT01000005
Bacillota
Brochothrix thermosphacta [MDLT]
201
129
-
Thr
TGT
[ENA]
¡û
>W1711362467
MDLU01000025
Bacillota
Brochothrix thermosphacta [MDLU]
201
129
-
Thr
TGT
[ENA]
¡û
>W1711362502
MDLV01000002
Bacillota
Brochothrix thermosphacta [MDLV]
965
893
-
Thr
TGT
[ENA]
¡û
>W141054367
AODI01000054
Bacillota
Brochothrix thermosphacta DSM 20171 = FSL F6-1036 [AODI]
580
508
-
Thr
TGT
[ENA]
¡û
>WENV170988282
MWVX01439741
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
128
203
+
Thr
TGT
[ENA]
¢þ
>C181082389
CP023483
Bacillota
Brochothrix thermosphacta BI [CP023483]
2151769
2151841
+
Thr
TGT
-
¡û
>C181088093
CP023643
Bacillota
Brochothrix thermosphacta BII [CP023643]
2105312
2105384
+
Thr
TGT
-
¡û
>C191012564
CP016839
Bacillota
Brochothrix thermosphacta TMW 2.1564 [CP016839]
550767
550695
-
Thr
TGT
-
¡û
>C191012637
CP016841
Bacillota
Brochothrix thermosphacta TMW 2.1572 [CP016841]
1286533
1286605
+
Thr
TGT
-
¡û
>C191227034
LT993737
Bacillota
Brochothrix thermosphacta [LT993737]
901730
901802
+
Thr
TGT
-
¡û
>W1930035146
OOIK01000033
Bacillota
Brochothrix thermosphacta [OOIK]
258
186
-
Thr
TGT
[ENA]
¡û
>W1911544966
OUNB01000019
Bacillota
Brochothrix thermosphacta [OUNB]
451
379
-
Thr
TGT
[ENA]
¡û
>W1911545039
OUNC01000039
Bacillota
Brochothrix thermosphacta [OUNC]
451
379
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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