This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256735 (29 seq.)
>W1711411857
MGTP01000164
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_54_10 [MGTP]
214
139
-
Thr
GGT
[ENA]
¡û
>W1711414293
MGZH01000200
Thermodesulfobacteriota
Geobacteraceae bacterium GWB2_52_12 [MGZH]
5729
5804
+
Thr
GGT
[ENA]
¡û
>W1711414314
MGZI01000143
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_48_7 [MGZI]
6463
6538
+
Thr
GGT
[ENA]
¡û
>W1711414352
MGZJ01000058
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_53_11 [MGZJ]
324
249
-
Thr
GGT
[ENA]
¡û
>W1711414369
MGZK01000025
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
23284
23359
+
Thr
GGT
[ENA]
¡û
>C010115
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
3147182
3147107
-
Thr
GGT
[Ensembl]
¡û
>C010234
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
1255420
1255495
+
Thr
GGT
[Ensembl]
¡û
>C017463
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
703934
704009
+
Thr
GGT
[Ensembl]
¡û
>w018113
AASH01000045
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
988
1063
+
Thr
GGT
[ENA]
¡û
>WENV181165084
OEIR01572309
[OEIR] soil metagenome; soil
96
21
-
Thr
GGT
[ENA]
¢þ
>WENV181312036
OFJB01034354
[OFJB] sludge metagenome; sludge
176
101
-
Thr
GGT
[ENA]
¢þ
>C08005290
CP001089
Thermodesulfobacteriota
Trichlorobacter lovleyi SZ [CP001089]
1376737
1376812
+
Thr
GGT
[Ensembl]
¡û
>WENV183702719
PDVI01028501
[PDVI] alkali sediment metagenome; glacial lake sediment
214
289
+
Thr
GGT
[ENA]
¢þ
>WENV183703372
PDVJ01011338
[PDVJ] alkali sediment metagenome; glacial lake sediment
531
606
+
Thr
GGT
[ENA]
¢þ
>WENV170003875
AGTN01485193
[AGTN] bioreactor metagenome; poplar biomass
225
300
+
Thr
GGT
[ENA]
¢þ
>WENV170606526
FUWD010679361
[FUWD] metagenome; unknown
231
306
+
Thr
GGT
[ENA]
¢þ
>WENV170660586
JXWU01000185
[JXWU] soil metagenome; rice field; organic control Plot
438
363
-
Thr
GGT
[ENA]
¢þ
>WENV170662354
JXWW01045622
[JXWW] soil metagenome; rice field; organic GM Plot
239
314
+
Thr
GGT
[ENA]
¢þ
>WENV170708155
LNAP01053848
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1267
1342
+
Thr
GGT
[ENA]
¢þ
>W09103545
AAJH01000016
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
29899
29974
+
Thr
GGT
[ENA]
¡û
>W09105097
AAON01000144
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
4488
4563
+
Thr
GGT
[ENA]
¡û
>C191000624
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
3069938
3069863
-
Thr
GGT
-
¡û
>C09106364
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
4034238
4034163
-
Thr
GGT
[Ensembl]
¡û
>W1510006457
BAZF01000018
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
41459
41384
-
Thr
GGT
[ENA]
¡û
>W1511501010
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
2605535
2605460
-
Thr
GGT
[ENA]
¡û
>C161025469
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
1247144
1247069
-
Thr
GGT
[Ensembl]
¡û
>W1610046441
BBCJ01000020
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
85056
85131
+
Thr
GGT
[ENA]
¡û
>W1710043237
BBCJ01000020
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
85056
85131
+
Thr
GGT
[ENA]
¡û
>W1710600681
FUWR01000019
Thermodesulfobacteriota
Trichlorobacter thiogenes [FUWR]
57639
57714
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK