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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257045 (56 seq.)
>W1710867791
LMIO01000003
Actinomycetota
Leifsonia sp. Root227 [LMIO]
322146
322219
+
Lys
TTT
[ENA]
¡û
>W1711173319
LWCT01000048
Actinomycetota
Plantibacter sp. H53 [LWCT]
19321
19396
+
Lys
TTT
[ENA]
¡û
>W131184646
ARTB01000003
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
1020685
1020610
-
Lys
TTT
[ENA]
¡û
>W1711505311
MKVJ01000022
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
6047
5974
-
Lys
TTT
[ENA]
¡û
>W141146501
AWVQ01000193
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
1997
1924
-
Lys
TTT
[ENA]
¡û
>WENV170010929
APMI01035217
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3040
2965
-
Lys
TTT
[ENA]
¡û
>WENV170974975
MTKY01083318
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1819
1744
-
Lys
TTT
[ENA]
¡û
>WENV170977655
MTKZ01028509
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
56
131
+
Lys
TTT
[ENA]
¡û
>W141532259
JHET01000006
Actinomycetota
Microbacterium sp. CH12i [JHET]
377840
377915
+
Lys
TTT
[ENA]
¡û
>W1910782930
MPIM01000023
Actinomycetota
Leucobacter sp. OLCALW19 [MPIM]
19911
19984
+
Lys
TTT
[ENA]
¡û
>W1910792233
MRAQ01000070
Actinomycetota
Leucobacter sp. OLTLW20 [MRAQ]
225455
225382
-
Lys
TTT
[ENA]
¡û
>W1910792274
MRAR01000010
Actinomycetota
Leucobacter sp. OLAS13 [MRAR]
16695
16622
-
Lys
TTT
[ENA]
¡û
>W1910792324
MRAS01000022
Actinomycetota
Leucobacter sp. OLCS4 [MRAS]
18541
18614
+
Lys
TTT
[ENA]
¡û
>W1910792365
MRAT01000015
Actinomycetota
Leucobacter sp. OLDS2 [MRAT]
20028
20101
+
Lys
TTT
[ENA]
¡û
>W1910792413
MRAU01000206
Actinomycetota
Leucobacter sp. OLES1 [MRAU]
1845
1772
-
Lys
TTT
[ENA]
¡û
>W1910792436
MRAV01000001
Actinomycetota
Leucobacter sp. OLIS6 [MRAV]
175143
175070
-
Lys
TTT
[ENA]
¡û
>W1910792514
MRAW01000069
Actinomycetota
Leucobacter sp. OLJS4 [MRAW]
19893
19966
+
Lys
TTT
[ENA]
¡û
>W1910804069
MTCJ01000067
Actinomycetota
Leucobacter sp. OAMLP11 [MTCJ]
19911
19984
+
Lys
TTT
[ENA]
¡û
>W1910804100
MTCK01000009
Actinomycetota
Leucobacter sp. OAMSW11 [MTCK]
16700
16627
-
Lys
TTT
[ENA]
¡û
>W1810090210
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
883029
882956
-
Lys
TTT
[ENA]
¡û
>W1810277208
PSTQ01000007
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
134
61
-
Lys
TTT
[ENA]
¡û
>W1810277566
PSTY01000020
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
253996
253922
-
Lys
TTT
[ENA]
¡û
>W2010668949
JACBZY010000001
Actinomycetota
Schumannella luteola DSM 23141 [JACBZY]
1940576
1940502
-
Lys
TTT
[ENA]
¡û
>W2010676085
JACCHJ010000001
Actinomycetota
Leifsonia naganoensis DSM 15166 [JACCHJ]
2874670
2874597
-
Lys
TTT
[ENA]
¡û
>W2010715139
JACHWJ010000004
Actinomycetota
Pseudoclavibacter helvolus DSM 20419 [JACHWJ]
395968
396041
+
Lys
TTT
[ENA]
¡û
>W2010892159
MPIM01000023
Actinomycetota
Leucobacter sp. OLCALW19 [MPIM]
19911
19984
+
Lys
TTT
[ENA]
¡û
>W2010900760
MRAQ01000070
Actinomycetota
Leucobacter sp. OLTLW20 [MRAQ]
225455
225382
-
Lys
TTT
[ENA]
¡û
>W2010900801
MRAR01000010
Actinomycetota
Leucobacter sp. OLAS13 [MRAR]
16695
16622
-
Lys
TTT
[ENA]
¡û
>W2010900851
MRAS01000022
Actinomycetota
Leucobacter sp. OLCS4 [MRAS]
18541
18614
+
Lys
TTT
[ENA]
¡û
>W2010900892
MRAT01000015
Actinomycetota
Leucobacter sp. OLDS2 [MRAT]
20028
20101
+
Lys
TTT
[ENA]
¡û
>W2010900940
MRAU01000206
Actinomycetota
Leucobacter sp. OLES1 [MRAU]
1845
1772
-
Lys
TTT
[ENA]
¡û
>W2010900963
MRAV01000001
Actinomycetota
Leucobacter sp. OLIS6 [MRAV]
175143
175070
-
Lys
TTT
[ENA]
¡û
>W2010901041
MRAW01000069
Actinomycetota
Leucobacter sp. OLJS4 [MRAW]
19893
19966
+
Lys
TTT
[ENA]
¡û
>W2010911891
MTCJ01000067
Actinomycetota
Leucobacter sp. OAMLP11 [MTCJ]
19911
19984
+
Lys
TTT
[ENA]
¡û
>W2010911922
MTCK01000009
Actinomycetota
Leucobacter sp. OAMSW11 [MTCK]
16700
16627
-
Lys
TTT
[ENA]
¡û
>W2011404134
RCWI01000001
Actinomycetota
Salinibacterium amurskyense JCM 12362 [RCWI]
883209
883136
-
Lys
TTT
[ENA]
¡û
>W2011481176
RQVS01000004
Actinomycetota
Zimmermannella sp. YIM 102482-1 [RQVS]
95836
95909
+
Lys
TTT
[ENA]
¡û
>W2110050851
BMZU01000001
Actinomycetota
Salinibacterium amurskyense KCTC 9931 [BMZU]
1018506
1018579
+
Lys
TTT
[ENA]
¡û
>W2110187035
JABUXV010000044
Actinomycetota
Brachybacterium sp. FME24 [JABUXV]
81
155
+
Lys
TTT
[ENA]
¡û
>W2110288797
JACYNV010000001
Actinomycetota
Plantibacter sp. CFBP 8775 CFBP8775 [JACYNV]
1507776
1507701
-
Lys
TTT
[ENA]
¡û
>W2110329762
JADKSI010000002
Actinomycetota
Plantibacter sp. VKM Ac-2876 [JADKSI]
1110158
1110233
+
Lys
TTT
[ENA]
¡û
>W2110329874
JADKSK010000001
Actinomycetota
Plantibacter sp. VKM Ac-2885 [JADKSK]
1504506
1504429
-
Lys
TTT
[ENA]
¡û
>W2110329890
JADKSL010000001
Actinomycetota
Pseudoclavibacter sp. VKM Ac-2867 [JADKSL]
596595
596669
+
Lys
TTT
[ENA]
¡û
>W2110413506
JAEHOH010000019
Actinomycetota
Leucobacter chromiisoli CSA1 [JAEHOH]
78120
78047
-
Lys
TTT
[ENA]
¡û
>W2110492811
JAFEVN010000001
Actinomycetota
Pseudoclavibacter sp. Marseille-Q4354 [JAFEVN]
114360
114433
+
Lys
TTT
[ENA]
¡û
>W2110532578
JAGFBF010000003
Actinomycetota
Leucobacter tardus K 70/01 [JAGFBF]
46824
46751
-
Lys
TTT
[ENA]
¡û
>W2110554094
JAGIOL010000001
Actinomycetota
Microbacterium amylolyticum DSM 24221 [JAGIOL]
2149296
2149220
-
Lys
TTT
[ENA]
¡û
>W2110680535
JAIHLP010000002
Actinomycetota
Leifsonia poae BS71 [JAIHLP]
1447855
1447931
+
Lys
TTT
[ENA]
¡û
>C201224410
CP049253
Actinomycetota
Microbacterium amylolyticum DSM 24221 [CP049253]
975817
975893
+
Lys
TTT
-
¡û
>C211199445
CP065037
Actinomycetota
Leifsonia sp. ZF2019 [CP065037]
3145995
3146068
+
Lys
TTT
-
¡û
>C211405833
CP083692
Actinomycetota
Leucobacter sp. Psy1 [CP083692]
2418502
2418575
+
Lys
TTT
-
¡û
>C231165032
CP080203
Actinomycetota
Mycetocola spongiae MSC19 [CP080203]
2729120
2729047
-
Lys
TTT
-
¡û
>C241111775
CP046619
Actinomycetota
Diaminobutyricimonas sp. LJ205 [CP046619]
2521429
2521503
+
Lys
TTT
-
¡û
>C241148463
CP051154
Actinomycetota
Leifsonia sp. PS1209 [CP051154]
2965043
2965117
+
Lys
TTT
-
¡û
>C241245505
CP121684
Actinomycetota
Lysinibacter sp. HNR [CP121684]
954816
954742
-
Lys
TTT
-
¡û
>W1511585448
LAYO01000106
Actinomycetota
Leucobacter sp. Ag1 [LAYO]
85801
85728
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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