This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257056 (61 seq.)
>W1710785498
LJHX01000080
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
26426
26501
+
Thr
CGT
[ENA]
¡û
>W1710860897
LMDG01000001
Alphaproteobacteria
Rhizobium sp. Root1220 [LMDG]
114100
114175
+
Thr
CGT
[ENA]
¡û
>W1710873838
LMNC01000003
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
77477
77402
-
Thr
CGT
[ENA]
¡û
>W1710876098
LMOY01000007
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
407422
407497
+
Thr
CGT
[ENA]
¡û
>W1710878183
LMQT01000001
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
600375
600450
+
Thr
CGT
[ENA]
¡û
>W1710878327
LMQW01000003
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
61040
61115
+
Thr
CGT
[ENA]
¡û
>W1710878450
LMQY01000074
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
60983
61058
+
Thr
CGT
[ENA]
¡û
>W1710882230
LMTR01000027
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
109550
109475
-
Thr
CGT
[ENA]
¡û
>W1711386966
MEGC01000001
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
23165
23240
+
Thr
CGT
[ENA]
¡û
>W1711387062
MEGD01000063
Alphaproteobacteria
Novosphingobium sp. SCN 66-18 [MEGD]
22199
22124
-
Thr
CGT
[ENA]
¡û
>W1711505657
MKVS01000047
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
677445
677370
-
Thr
CGT
[ENA]
¡û
>W131052436
AMYY01000020
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
40898
40973
+
Thr
CGT
[ENA]
¡û
>WENV180020412
FTCZ01003164
[FTCZ] metagenome; soil
122
47
-
Thr
CGT
[ENA]
¢þ
>WENV181384384
OFRI01000507
[OFRI] wastewater metagenome; Exp Tend VB 90WW
6329
6404
+
Thr
CGT
[ENA]
¢þ
>W141136874
AWGF01000016
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
13028
12953
-
Thr
CGT
[ENA]
¡û
>WENV183728213
PJTQ01000001
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
681831
681756
-
Thr
CGT
[ENA]
¢þ
>WENV183734228
PJTZ01000299
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
6150
6225
+
Thr
CGT
[ENA]
¢þ
>WENV183739713
PJUF01000001
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
681831
681756
-
Thr
CGT
[ENA]
¢þ
>WENV170018638
BBPD01000205
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
38749
38824
+
Thr
CGT
[ENA]
¢þ
>WENV170019797
BBPE01000625
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3214
3139
-
Thr
CGT
[ENA]
¢þ
>WENV170577750
FSSH01000778
[FSSH] freshwater metagenome; drinking water
79701
79776
+
Thr
CGT
[ENA]
¢þ
>WENV170658967
JUGB01003210
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
382
457
+
Thr
CGT
[ENA]
¢þ
>WENV170710321
LNFM01001526
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
57812
57737
-
Thr
CGT
[ENA]
¢þ
>WENV170784125
MCHG01000022
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
9239
9164
-
Thr
CGT
[ENA]
¢þ
>WENV170984427
MWVV01282744
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
7
82
+
Thr
CGT
[ENA]
¢þ
>C181056257
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2106312
2106237
-
Thr
CGT
-
¡û
>C191004228
AP018711
Alphaproteobacteria
Sphingosinicella microcystinivorans B9 [AP018711]
171373
171448
+
Thr
CGT
-
¡û
>W09135230
ACVL01000018
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
19856
19931
+
Thr
CGT
[ENA]
¡û
>C191166114
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
3143419
3143494
+
Thr
CGT
-
¡û
>C191170983
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
1389194
1389119
-
Thr
CGT
-
¡û
>W1911566960
PCPF01000013
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
222
297
+
Thr
CGT
[ENA]
¡û
>W1911567303
PCPM01000020
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
11941
12016
+
Thr
CGT
[ENA]
¡û
>W1911567376
PCPO01000001
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
202
277
+
Thr
CGT
[ENA]
¡û
>W1810608986
QGTR01000003
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
181487
181412
-
Thr
CGT
[ENA]
¡û
>W1810676611
QKMD01000002
Alphaproteobacteria
Novosphingobium sp. GV010 [QKMD]
61740
61665
-
Thr
CGT
[ENA]
¡û
>W1810693179
QLLC01000057
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
466
391
-
Thr
CGT
[ENA]
¡û
>W1510019748
BBXA01000029
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
22708
22783
+
Thr
CGT
[ENA]
¡û
>W11123374
ADUH01000092
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
9703
9628
-
Thr
CGT
[ENA]
¡û
>W1511480189
JWIT01000001
Alphaproteobacteria
Agrobacterium arsenijevicii KFB 330 [JWIT]
104019
104094
+
Thr
CGT
[ENA]
¡û
>W1511480709
JWJH01000015
Alphaproteobacteria
Rhizobium nepotum Jul-39 [JWJH]
90989
90914
-
Thr
CGT
[ENA]
¡û
>W1511489469
JWSY01000015
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
81151
81226
+
Thr
CGT
[ENA]
¡û
>W1511547894
JZRG01000022
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
75669
75594
-
Thr
CGT
[ENA]
¡û
>W1511576812
LAPV01000159
Alphaproteobacteria
Devosia psychrophila Cr7-05 [LAPV]
103649
103574
-
Thr
CGT
[ENA]
¡û
>C161089116
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
3126452
3126377
-
Thr
CGT
[Ensembl]
¡û
>C161105261
HG966617
Alphaproteobacteria
Candidatus Phaeomarinobacter ectocarpi Ec32 [HG966617]
3154035
3153960
-
Thr
CGT
[Ensembl]
¡û
>W1610056455
BBWH01000005
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
53426
53501
+
Thr
CGT
[ENA]
¡û
>W1610074234
BCWM01000018
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
27803
27728
-
Thr
CGT
[ENA]
¡û
>W1610649304
LJHX01000080
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
26426
26501
+
Thr
CGT
[ENA]
¡û
>W1610723243
LMDG01000001
Alphaproteobacteria
Rhizobium sp. Root1220 [LMDG]
114100
114175
+
Thr
CGT
[ENA]
¡û
>W1610736184
LMNC01000003
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
77477
77402
-
Thr
CGT
[ENA]
¡û
>W1610738444
LMOY01000007
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
407422
407497
+
Thr
CGT
[ENA]
¡û
>W1610740529
LMQT01000001
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
600375
600450
+
Thr
CGT
[ENA]
¡û
>W1610740673
LMQW01000003
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
61040
61115
+
Thr
CGT
[ENA]
¡û
>W1610740796
LMQY01000074
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
60983
61058
+
Thr
CGT
[ENA]
¡û
>W1610744156
LMTR01000027
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
109550
109475
-
Thr
CGT
[ENA]
¡û
>W1710053154
BBWH01000005
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
53426
53501
+
Thr
CGT
[ENA]
¡û
>W1710071352
BCWM01000018
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
27803
27728
-
Thr
CGT
[ENA]
¡û
>W1710505483
FMTS01000005
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
306891
306966
+
Thr
CGT
[ENA]
¡û
>W1710512402
FMZJ01000026
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
15556
15631
+
Thr
CGT
[ENA]
¡û
>W1710527041
FNKT01000002
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
466702
466777
+
Thr
CGT
[ENA]
¡û
>W1710558647
FOMB01000001
Alphaproteobacteria
Devosia psychrophila [FOMB]
84648
84723
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK