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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257056 (6 seq.)
>W131203047
ASXS01000017
Gammaproteobacteria
Vibrio fluvialis PG41 [ASXS]
138407
138332
-
Met
CAT
[ENA]
¡û
>W1711500656
MKQZ01000009
Gammaproteobacteria
Vibrio parahaemolyticus [MKQZ]
1641
1716
+
Met
CAT
[ENA]
¡û
>C191015903
CP019292
Gammaproteobacteria
Vibrio vulnificus FORC_053 [CP019290, CP019291, CP019292]
445302
445377
+
Met
CAT
-
¡û
>W1910792614
MRBW01000037
Gammaproteobacteria
Vibrio parahaemolyticus 229 [MRBW]
324
399
+
Met
CAT
[ENA]
¡û
>W1911799885
QYSR01000002
Gammaproteobacteria
Vibrio parahaemolyticus Vp26 [QYSR]
652005
651930
-
Met
CAT
[ENA]
¡û
>W1511541528
JZEQ01000012
Gammaproteobacteria
Vibrio vulnificus SC9729 [JZEQ]
212043
211968
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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