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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257082 (34 seq.)
>W1710892423
LNDS01000037
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
102121
102046
-
Val
TAC
[ENA]
¡û
>W1711069420
LSFP01000005
Alphaproteobacteria
Zymomonas mobilis [LSFP]
127147
127222
+
Val
TAC
[ENA]
¡û
>W1711505988
MKWA01000002
Alphaproteobacteria
Rhizobiales bacterium 64-17 [MKWA]
405914
405839
-
Val
TAC
[ENA]
¡û
>C171115151
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
1926142
1926067
-
Val
TAC
-
¡û
>W131167844
ARDP01000103
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Vc2 [ARDP]
4666
4591
-
Val
TAC
[ENA]
¡û
>W131046827
AMSR01000019
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
132838
132763
-
Val
TAC
[ENA]
¡û
>C018727
AM236080
Alphaproteobacteria
Rhizobium johnstonii 3841 [AM236080]
1782296
1782221
-
Val
TAC
[Ensembl]
¡û
>C027930
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1384272
1384347
+
Val
TAC
[Ensembl]
¡û
>WENV180254822
OBEQ010669151
[OBEQ] groundwater metagenome; groundwater
724
649
-
Val
TAC
[ENA]
¢þ
>WENV181165607
OEIS01059364
[OEIS] soil metagenome; soil
64
137
+
Val
TAC
[ENA]
¢þ
>W141260976
CCAO010000084
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
126238
126313
+
Val
TAC
[ENA]
¡û
>WENV183664175
ORJL010351204
[ORJL] groundwater metagenome; groundwater
855
930
+
Val
TAC
[ENA]
¢þ
>WENV183679139
ORMF010020879
[ORMF] groundwater metagenome; groundwater
844
769
-
Val
TAC
[ENA]
¢þ
>WENV183686452
ORMF011003216
[ORMF] groundwater metagenome; groundwater
1056
1131
+
Val
TAC
[ENA]
¢þ
>WENV170710890
LNFM01002944
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
17935
18010
+
Val
TAC
[ENA]
¢þ
>WENV170713478
LNFM01032565
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2713
2788
+
Val
TAC
[ENA]
¢þ
>C181088917
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1392631
1392706
+
Val
TAC
-
¡û
>C181089244
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1386632
1386707
+
Val
TAC
-
¡û
>C191145591
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1384231
1384306
+
Val
TAC
-
¡û
>C191145642
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1384231
1384306
+
Val
TAC
-
¡û
>C191145693
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1384231
1384306
+
Val
TAC
-
¡û
>W1910182398
BJMW01000002
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
81471
81396
-
Val
TAC
[ENA]
¡û
>W1910182456
BJMX01000002
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
90910
90835
-
Val
TAC
[ENA]
¡û
>C141008808
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
1986982
1986907
-
Val
TAC
[Ensembl]
¡û
>C151004610
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
1999960
1999885
-
Val
TAC
[Ensembl]
¡û
>C151004661
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
2000562
2000487
-
Val
TAC
[Ensembl]
¡û
>C151079195
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
1489421
1489346
-
Val
TAC
[Ensembl]
¡û
>C10114594
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
2112935
2112860
-
Val
TAC
[Ensembl]
¡û
>C11124234
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
1979254
1979179
-
Val
TAC
[Ensembl]
¡û
>C121003154
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
2009912
2009837
-
Val
TAC
[Ensembl]
¡û
>C121015268
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
1949309
1949234
-
Val
TAC
[Ensembl]
¡û
>W1610752689
LNDS01000037
Alphaproteobacteria
Rhizobiales bacterium Ga0077525 [LNDS]
102121
102046
-
Val
TAC
[ENA]
¡û
>W1610909948
LSFP01000005
Alphaproteobacteria
Zymomonas mobilis [LSFP]
127147
127222
+
Val
TAC
[ENA]
¡û
>W1710600341
FUWJ01000001
Alphaproteobacteria
Enhydrobacter aerosaccus [FUWJ]
1263031
1263106
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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