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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25732 (21 seq.)
>W1711074021
LSJD01000144
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
52774
52863
+
Ser
CGA
[ENA]
¡û
>W131111807
APMP01000009
Alphaproteobacteria
Caulobacter vibrioides OR37 [APMP]
69535
69624
+
Ser
CGA
[ENA]
¡û
>C005377
AE005673
Alphaproteobacteria
Caulobacter vibrioides CB15 [AE005673]
473144
473055
-
Ser
CGA
[Ensembl]
¡û
>WENV181223053
OFDC01001494
[OFDC] hot springs metagenome; Water
5031
4942
-
Ser
CGA
[ENA]
¢þ
>WENV181227644
OFDN01025205
[OFDN] hot springs metagenome; Water
1718
1807
+
Ser
CGA
[ENA]
¢þ
>WENV181416037
OGCL01044543
[OGCL] hot springs metagenome; Hot spring water
757
846
+
Ser
CGA
[ENA]
¢þ
>WENV183731464
PJTT01000006
[PJTT] soil metagenome; Soil (2) enriched on wood chips
336724
336813
+
Ser
CGA
[ENA]
¢þ
>C181078864
CP023313
Alphaproteobacteria
Caulobacter vibrioides CB2 [CP023313]
491463
491374
-
Ser
CGA
-
¡û
>C181078915
CP023314
Alphaproteobacteria
Caulobacter vibrioides CB1 [CP023314]
499174
499085
-
Ser
CGA
-
¡û
>C181078944
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
3675759
3675848
+
Ser
CGA
-
¡û
>C191114314
CP033875
Alphaproteobacteria
Caulobacter sp. FWC26 [CP033875]
562674
562585
-
Ser
CGA
-
¡û
>C191119799
CP034122
Alphaproteobacteria
Caulobacter vibrioides CB2A [CP034122]
498197
498108
-
Ser
CGA
-
¡û
>W1910727957
MGVU01000361
Alphaproteobacteria
Erythrobacter sp. RIFCSPHIGHO2_12_FULL_63_10 [MGVU]
21848
21759
-
Ser
CGA
[ENA]
¡û
>C09103161
CP001340
Alphaproteobacteria
Caulobacter vibrioides NA1000 [CP001340]
499174
499085
-
Ser
CGA
[Ensembl]
¡û
>W1810069344
PEBG01000001
Alphaproteobacteria
Caulobacter sp. FWC26 [PEBG]
337159
337248
+
Ser
CGA
[ENA]
¡û
>W1810177645
PJRR01000014
Alphaproteobacteria
Caulobacter vibrioides DSM 9893 [PJRR]
317013
317102
+
Ser
CGA
[ENA]
¡û
>W1810594372
QFZL01000002
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
50900
50811
-
Ser
CGA
[ENA]
¡û
>W1610535225
JRQQ01000007
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
22738
22827
+
Ser
CGA
[ENA]
¡û
>W1610913326
LSJD01000144
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
52774
52863
+
Ser
CGA
[ENA]
¡û
>W1611004980
LXQM01000017
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
35545
35634
+
Ser
CGA
[ENA]
¡û
>W1710637694
JRQQ01000007
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
22738
22827
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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