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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257438 (133 seq.)
>W1710834847
LLJH01000008
Actinomycetota
Cutibacterium avidum [LLJH]
3362
3287
-
Leu
TAA
[ENA]
¡û
>W1710834870
LLJI01000001
Actinomycetota
Cutibacterium avidum [LLJI]
3472
3397
-
Leu
TAA
[ENA]
¡û
>W1710834922
LLJJ01000002
Actinomycetota
Cutibacterium avidum [LLJJ]
3362
3287
-
Leu
TAA
[ENA]
¡û
>W1711055704
LRVD01000003
Actinomycetota
Cutibacterium avidum [LRVD]
851689
851764
+
Leu
TAA
[ENA]
¡û
>W1711256158
LYSN01000016
Actinomycetota
Cutibacterium avidum [LYSN]
2752
2677
-
Leu
TAA
[ENA]
¡û
>C171054427
CP016954
Actinomycetota
Cutibacterium avidum DPC 6544 [CP016954]
934523
934448
-
Leu
TAA
-
¡û
>W131206183
ATFM01000005
Actinomycetota
Propionibacterium sp. HGH0353 [ATFM]
970632
970707
+
Leu
TAA
[ENA]
¡û
>WENV180165507
OAVK01003112
[OAVK] human gut metagenome; faeces
295
369
+
Leu
TAA
[ENA]
¡û
>WENV180190718
OAXA01000460
[OAXA] human gut metagenome; faeces
3227
3153
-
Leu
TAA
[ENA]
¡û
>WENV180226759
OBBS01000171
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
9147
9221
+
Leu
TAA
[ENA]
¡û
>WENV180227000
OBBT01000149
[OBBT] human gut metagenome; Infant 2 DOL 16 gut
9147
9221
+
Leu
TAA
[ENA]
¡û
>WENV180227906
OBBV01000228
[OBBV] human gut metagenome; Infant 2 DOL 24 gut
9147
9221
+
Leu
TAA
[ENA]
¡û
>WENV180228171
OBBW01000187
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
2980
2906
-
Leu
TAA
[ENA]
¡û
>WENV180230006
OBCK01000247
[OBCK] human gut metagenome; human gut
3226
3152
-
Leu
TAA
[ENA]
¡û
>WENV180241346
OBDG01000078
[OBDG] human gut metagenome; human gut
3235
3161
-
Leu
TAA
[ENA]
¡û
>WENV180312393
OBJX01016756
[OBJX] human gut metagenome; fecal sample
61
135
+
Leu
TAA
[ENA]
¡û
>WENV180421068
OBVP01011003
[OBVP] human gut metagenome; faeces
51
125
+
Leu
TAA
[ENA]
¡û
>WENV180422209
OBVS01001112
[OBVS] human gut metagenome; faeces
467
541
+
Leu
TAA
[ENA]
¡û
>WENV180493951
OBZZ01001013
[OBZZ] human gut metagenome; faeces
5067
5141
+
Leu
TAA
[ENA]
¡û
>WENV180556147
OCJQ01002127
[OCJQ] human gut metagenome; Infant 2 DOL 15 gut
348
274
-
Leu
TAA
[ENA]
¡û
>WENV180556541
OCJS01000255
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
9147
9221
+
Leu
TAA
[ENA]
¡û
>WENV180556766
OCJT01000308
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
9147
9221
+
Leu
TAA
[ENA]
¡û
>WENV180557253
OCJV01000284
[OCJV] human gut metagenome; Infant 2 DOL 20 gut
9147
9221
+
Leu
TAA
[ENA]
¡û
>WENV180557551
OCJW01000275
[OCJW] human gut metagenome; Infant 2 DOL 21 gut
9196
9270
+
Leu
TAA
[ENA]
¡û
>WENV180557868
OCJX01000275
[OCJX] human gut metagenome; Infant 2 DOL 22 gut
9147
9221
+
Leu
TAA
[ENA]
¡û
>WENV180558960
OCKA01000204
[OCKA] human gut metagenome; Infant 2 DOL 25 gut
9196
9270
+
Leu
TAA
[ENA]
¡û
>WENV180559489
OCKC01000263
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
9147
9221
+
Leu
TAA
[ENA]
¡û
>WENV180559799
OCKD01000152
[OCKD] human gut metagenome; Infant 2 DOL 27 gut
2980
2906
-
Leu
TAA
[ENA]
¡û
>WENV180562060
OCLA01000080
[OCLA] human gut metagenome; human gut
3235
3161
-
Leu
TAA
[ENA]
¡û
>WENV180564528
OCLE01000071
[OCLE] human gut metagenome; human gut
32295
32369
+
Leu
TAA
[ENA]
¡û
>WENV180566346
OCLI01000635
[OCLI] human gut metagenome; human gut
954
1028
+
Leu
TAA
[ENA]
¡û
>WENV180568722
OCLN01000417
[OCLN] human gut metagenome; human gut
1128
1202
+
Leu
TAA
[ENA]
¡û
>WENV180568901
OCLO01000647
[OCLO] human gut metagenome; human gut
119
193
+
Leu
TAA
[ENA]
¡û
>WENV180568969
OCLP01000294
[OCLP] human gut metagenome; human gut
1405
1479
+
Leu
TAA
[ENA]
¡û
>W141056247
AOUA01000278
Actinomycetota
Cutibacterium avidum TM16 [AOUA]
1367
1442
+
Leu
TAA
[ENA]
¡û
>WENV180623737
OCQF01002258
[OCQF] human gut metagenome; Infant 2 DOL 14 gut
229
303
+
Leu
TAA
[ENA]
¡û
>WENV180625015
OCQI01000104
[OCQI] human gut metagenome; human gut
5428
5502
+
Leu
TAA
[ENA]
¡û
>WENV180625131
OCQJ01000047
[OCQJ] human gut metagenome; human gut
30938
31012
+
Leu
TAA
[ENA]
¡û
>WENV180639236
OCRJ01000020
[OCRJ] human gut metagenome; human gut
32949
32875
-
Leu
TAA
[ENA]
¡û
>WENV181326486
OFLM01000001
[OFLM] metagenome; faeces
7485
7411
-
Leu
TAA
[ENA]
¡û
>WENV181327053
OFLO01000096
[OFLO] metagenome; faeces
3375
3301
-
Leu
TAA
[ENA]
¡û
>WENV181327349
OFLP01001502
[OFLP] metagenome; faeces
519
593
+
Leu
TAA
[ENA]
¡û
>WENV181328252
OFLS01004208
[OFLS] metagenome; faeces
516
590
+
Leu
TAA
[ENA]
¡û
>WENV181328595
OFLU01000211
[OFLU] metagenome; faeces
10532
10606
+
Leu
TAA
[ENA]
¡û
>WENV181328748
OFLV01000002
[OFLV] metagenome; faeces
3519
3445
-
Leu
TAA
[ENA]
¡û
>WENV181329189
OFLW01000032
[OFLW] metagenome; faeces
3239
3165
-
Leu
TAA
[ENA]
¡û
>W141155762
AXMF01000003
Actinomycetota
Propionibacterium sp. KPL2005 [AXMF]
1061669
1061744
+
Leu
TAA
[ENA]
¡û
>W141155843
AXMH01000001
Actinomycetota
Propionibacterium sp. KPL2000 [AXMH]
1392335
1392410
+
Leu
TAA
[ENA]
¡û
>W141155939
AXMJ01000003
Actinomycetota
Propionibacterium sp. KPL1852 [AXMJ]
857523
857598
+
Leu
TAA
[ENA]
¡û
>W141156116
AXMN01000001
Actinomycetota
Propionibacterium sp. KPL1838 [AXMN]
8639
8564
-
Leu
TAA
[ENA]
¡û
>WENV181802165
OGSC01007667
[OGSC] human gut metagenome; fecal sample 8 from infant 5
463
537
+
Leu
TAA
[ENA]
¡û
>WENV181804435
OGSF01000730
[OGSF] human gut metagenome; fecal sample 3 from infant 5
3223
3149
-
Leu
TAA
[ENA]
¡û
>WENV181806243
OGSK01000358
[OGSK] human gut metagenome; fecal sample 2 from infant 5
11672
11746
+
Leu
TAA
[ENA]
¡û
>WENV181806693
OGSL01000961
[OGSL] human gut metagenome; fecal sample 6 from infant 5
405
331
-
Leu
TAA
[ENA]
¡û
>WENV181810257
OGSU01010682
[OGSU] human gut metagenome; fecal sample 7 from infant 5
479
405
-
Leu
TAA
[ENA]
¡û
>WENV181818452
OGTS01002251
[OGTS] human gut metagenome; fecal sample 4 from infant 4
1277
1203
-
Leu
TAA
[ENA]
¡û
>WENV181821333
OGUE01000649
[OGUE] human gut metagenome; fecal sample 1 from infant 5
2979
2905
-
Leu
TAA
[ENA]
¡û
>WENV182799844
OJTW01002136
[OJTW] human gut metagenome; human gut
851
925
+
Leu
TAA
[ENA]
¡û
>WENV182800235
OJTZ01002936
[OJTZ] human gut metagenome; human gut
127
53
-
Leu
TAA
[ENA]
¡û
>WENV182804305
OJUT01000127
[OJUT] human gut metagenome; human gut
3264
3190
-
Leu
TAA
[ENA]
¡û
>WENV182804837
OJUX01002319
[OJUX] human gut metagenome; human gut
249
323
+
Leu
TAA
[ENA]
¡û
>WENV182806787
OJVS01000096
[OJVS] human gut metagenome; human gut
36632
36706
+
Leu
TAA
[ENA]
¡û
>WENV182807409
OJVW01000998
[OJVW] human gut metagenome; human gut
2273
2347
+
Leu
TAA
[ENA]
¡û
>WENV182809749
OJWS01000284
[OJWS] human gut metagenome; human gut
4935
5009
+
Leu
TAA
[ENA]
¡û
>WENV182812265
OJXR01005383
[OJXR] human gut metagenome; human gut
377
303
-
Leu
TAA
[ENA]
¡û
>WENV182812613
OJXT01000212
[OJXT] human gut metagenome; human gut
3226
3152
-
Leu
TAA
[ENA]
¡û
>WENV182813712
OJYF01005520
[OJYF] human gut metagenome; human gut
97
171
+
Leu
TAA
[ENA]
¡û
>WENV182814249
OJYH01000242
[OJYH] human gut metagenome; human gut
2979
2905
-
Leu
TAA
[ENA]
¡û
>WENV182815024
OJYO01000358
[OJYO] human gut metagenome; human gut
1784
1710
-
Leu
TAA
[ENA]
¡û
>WENV182815320
OJYQ01000850
[OJYQ] human gut metagenome; human gut
1600
1526
-
Leu
TAA
[ENA]
¡û
>WENV182815389
OJYR01000003
[OJYR] human gut metagenome; human gut
208874
208948
+
Leu
TAA
[ENA]
¡û
>WENV182815967
OJYV01000083
[OJYV] human gut metagenome; human gut
3024
2950
-
Leu
TAA
[ENA]
¡û
>WENV182817858
OJZM01000841
[OJZM] human gut metagenome; human gut
5106
5180
+
Leu
TAA
[ENA]
¡û
>WENV182821378
OKAW01000208
[OKAW] human gut metagenome; human gut
1480
1406
-
Leu
TAA
[ENA]
¡û
>WENV182821749
OKBA01000428
[OKBA] human gut metagenome; human gut
3024
2950
-
Leu
TAA
[ENA]
¡û
>WENV182825957
OKCO01000568
[OKCO] human gut metagenome; human gut
2976
2902
-
Leu
TAA
[ENA]
¡û
>WENV182826504
OKCS01000110
[OKCS] human gut metagenome; human gut
3388
3314
-
Leu
TAA
[ENA]
¡û
>WENV182826750
OKCU01000188
[OKCU] human gut metagenome; human gut
5106
5180
+
Leu
TAA
[ENA]
¡û
>WENV182827368
OKCZ01000005
[OKCZ] human gut metagenome; human gut
115471
115545
+
Leu
TAA
[ENA]
¡û
>WENV182830522
OKDZ01000126
[OKDZ] human gut metagenome; human gut
3024
2950
-
Leu
TAA
[ENA]
¡û
>WENV182832038
OKEJ01000076
[OKEJ] human gut metagenome; human gut
30940
31014
+
Leu
TAA
[ENA]
¡û
>WENV182837348
OKGF01002352
[OKGF] human gut metagenome; human gut
326
252
-
Leu
TAA
[ENA]
¡û
>WENV182840996
OKHP01000471
[OKHP] human gut metagenome; human gut
5016
5090
+
Leu
TAA
[ENA]
¡û
>WENV182841443
OKHV01000233
[OKHV] human gut metagenome; human gut
3290
3216
-
Leu
TAA
[ENA]
¡û
>WENV182842612
OKIF01000128
[OKIF] human gut metagenome; human gut
2976
2902
-
Leu
TAA
[ENA]
¡û
>WENV182847981
OKKE01001715
[OKKE] human gut metagenome; human gut
83
157
+
Leu
TAA
[ENA]
¡û
>WENV182850774
OKLF01000935
[OKLF] human gut metagenome; human gut
1473
1547
+
Leu
TAA
[ENA]
¡û
>WENV182851335
OKLL01000483
[OKLL] human gut metagenome; human gut
3290
3216
-
Leu
TAA
[ENA]
¡û
>WENV182851884
OKLS01003318
[OKLS] human gut metagenome; human gut
43
117
+
Leu
TAA
[ENA]
¡û
>WENV182852302
OKLW01000800
[OKLW] human gut metagenome; human gut
266
192
-
Leu
TAA
[ENA]
¡û
>WENV182853418
OKMK01000537
[OKMK] human gut metagenome; human gut
5033
5107
+
Leu
TAA
[ENA]
¡û
>WENV182857431
OKNX01000492
[OKNX] human gut metagenome; human gut
5116
5190
+
Leu
TAA
[ENA]
¡û
>WENV182858236
OKOC01000471
[OKOC] human gut metagenome; human gut
4972
5046
+
Leu
TAA
[ENA]
¡û
>WENV182860110
OKOR01000108
[OKOR] human gut metagenome; human gut
30940
31014
+
Leu
TAA
[ENA]
¡û
>WENV182860694
OKOX01000117
[OKOX] human gut metagenome; human gut
29791
29865
+
Leu
TAA
[ENA]
¡û
>WENV182861347
OKPE01000183
[OKPE] human gut metagenome; human gut
3024
2950
-
Leu
TAA
[ENA]
¡û
>WENV182863398
OKPS01001357
[OKPS] human gut metagenome; human gut
1029
1103
+
Leu
TAA
[ENA]
¡û
>WENV182864557
OKQD01000615
[OKQD] human gut metagenome; human gut
2485
2411
-
Leu
TAA
[ENA]
¡û
>WENV182864789
OKQE01002584
[OKQE] human gut metagenome; human gut
109
183
+
Leu
TAA
[ENA]
¡û
>WENV182941520
OKVG01002483
[OKVG] human gut metagenome; human gut
3051
2977
-
Leu
TAA
[ENA]
¡û
>WENV182944049
OKVI01002496
[OKVI] human gut metagenome; human gut
2718
2792
+
Leu
TAA
[ENA]
¡û
>WENV182952776
OKVW01019479
[OKVW] human gut metagenome; human gut
440
366
-
Leu
TAA
[ENA]
¡û
>WENV182960996
OKWK01000074
[OKWK] human gut metagenome; stool
140905
140979
+
Leu
TAA
[ENA]
¡û
>WENV183083600
OLJC01003986
[OLJC] human gut metagenome; human gut
440
514
+
Leu
TAA
[ENA]
¡û
>WENV183087434
OLJH01003563
[OLJH] human gut metagenome; human gut
474
400
-
Leu
TAA
[ENA]
¡û
>W1910852665
NBIO01000002
Actinomycetota
Cutibacterium avidum CI878 [NBIO]
371816
371890
+
Leu
TAA
[ENA]
¡û
>W1910852712
NBIP01000003
Actinomycetota
Cutibacterium avidum CI882 [NBIP]
3824
3750
-
Leu
TAA
[ENA]
¡û
>W1910852796
NBIQ01000015
Actinomycetota
Cutibacterium avidum CI828 [NBIQ]
8982
8908
-
Leu
TAA
[ENA]
¡û
>W1910852840
NBIR01000014
Actinomycetota
Cutibacterium avidum CI855 [NBIR]
31329
31403
+
Leu
TAA
[ENA]
¡û
>W1910852853
NBIS01000002
Actinomycetota
Cutibacterium avidum CI853 [NBIS]
64474
64548
+
Leu
TAA
[ENA]
¡û
>W1911137657
NOWI01000003
Actinomycetota
Cutibacterium avidum P16-029 [NOWI]
3108
3034
-
Leu
TAA
[ENA]
¡û
>W2010270059
CABKSM020000001
Actinomycetota
Cutibacterium avidum [CABKSM]
1860768
1860842
+
Leu
TAA
[ENA]
¡û
>W2010934431
NBIO01000002
Actinomycetota
Cutibacterium avidum CI878 [NBIO]
371816
371890
+
Leu
TAA
[ENA]
¡û
>W2010934478
NBIP01000003
Actinomycetota
Cutibacterium avidum CI882 [NBIP]
3824
3750
-
Leu
TAA
[ENA]
¡û
>W2010934562
NBIQ01000015
Actinomycetota
Cutibacterium avidum CI828 [NBIQ]
8982
8908
-
Leu
TAA
[ENA]
¡û
>W2010934606
NBIR01000014
Actinomycetota
Cutibacterium avidum CI855 [NBIR]
31329
31403
+
Leu
TAA
[ENA]
¡û
>W2010934619
NBIS01000002
Actinomycetota
Cutibacterium avidum CI853 [NBIS]
64474
64548
+
Leu
TAA
[ENA]
¡û
>W2011014090
NOWI01000003
Actinomycetota
Cutibacterium avidum P16-029 [NOWI]
3108
3034
-
Leu
TAA
[ENA]
¡û
>W2011258793
QJIA01000005
Actinomycetota
Cutibacterium avidum T19584 [QJIA]
3108
3034
-
Leu
TAA
[ENA]
¡û
>W2011964269
VBRS01000037
Actinomycetota
Cutibacterium avidum P313 [VBRS]
8633
8559
-
Leu
TAA
[ENA]
¡û
>C211018011
AP024308
Actinomycetota
Cutibacterium avidum TP-CV4 [AP024308]
589485
589559
+
Leu
TAA
-
¡û
>C211018057
AP024309
Actinomycetota
Cutibacterium avidum TPCV-14 [AP024309]
585112
585186
+
Leu
TAA
-
¡û
>C211248515
CP068549
Actinomycetota
Cutibacterium avidum KGMB02810 [CP068549]
16937
16863
-
Leu
TAA
-
¡û
>C211248530
CP068550
Actinomycetota
Cutibacterium avidum KGMB09337 [CP068550]
1656682
1656756
+
Leu
TAA
-
¡û
>C211257667
CP069240
Actinomycetota
Cutibacterium avidum KCTC 5339 [CP069240]
551996
552070
+
Leu
TAA
-
¡û
>C231568254
CP115668
Actinomycetota
Cutibacterium sp. CBA3108 [CP115668]
537211
537284
+
Leu
TAA
-
¡û
>W11177573
AGBA01000013
Actinomycetota
Cutibacterium avidum ATCC 25577 [AGBA]
576121
576196
+
Leu
TAA
[ENA]
¡û
>C131015029
CP005287
Actinomycetota
Cutibacterium avidum 44067 [CP005287]
1763306
1763231
-
Leu
TAA
[Ensembl]
¡û
>W1610896750
LRVD01000003
Actinomycetota
Cutibacterium avidum [LRVD]
851689
851764
+
Leu
TAA
[ENA]
¡û
>W1610958220
LVJK01000043
Actinomycetota
Cutibacterium avidum HL083PV1 [LVJK]
3585
3510
-
Leu
TAA
[ENA]
¡û
>W1610958250
LVJL01000010
Actinomycetota
Cutibacterium avidum HL307PV1 [LVJL]
5018
5093
+
Leu
TAA
[ENA]
¡û
>W1611019534
LYSN01000016
Actinomycetota
Cutibacterium avidum [LYSN]
2752
2677
-
Leu
TAA
[ENA]
¡û
>WENV086003
BABE01000239
Gut microbiome of Human (healthy human sample In-E, Infant, Male)
7857
7782
-
Leu
TAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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