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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257470 (20 seq.)
>W1710923827
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
496
421
-
Thr
GGT
[ENA]
¡û
>W131162734
AQZD01000013
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
2946
2871
-
Thr
GGT
[ENA]
¡û
>W131164676
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
14981
14906
-
Thr
GGT
[ENA]
¡û
>C007796
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1723631
1723706
+
Thr
GGT
[Ensembl]
¡û
>w002203
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
68440
68368
-
Thr
GGT
[ENA]
¡û
>w002188
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
71591
71519
-
Thr
GGT
[ENA]
¡û
>WENV170002397
AGTN01018049
[AGTN] bioreactor metagenome; poplar biomass
423
498
+
Thr
GGT
[ENA]
¢þ
>C09103992
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2798310
2798385
+
Thr
GGT
[Ensembl]
¡û
>C09104007
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2801461
2801536
+
Thr
GGT
[Ensembl]
¡û
>W1810004272
BFAV01000181
Bacillota
Desulfocucumis palustris NAW-5 [BFAV]
559
484
-
Thr
GGT
[ENA]
¡û
>W1511564228
LADO01000023
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
1564
1489
-
Thr
GGT
[ENA]
¡û
>C121011433
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2107332
2107407
+
Thr
GGT
[Ensembl]
¡û
>C121011448
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2108994
2109069
+
Thr
GGT
[Ensembl]
¡û
>W121007262
AFZX01000024
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
54
129
+
Thr
GGT
[ENA]
¡û
>W121010375
AGJE01000018
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
2946
3021
+
Thr
GGT
[ENA]
¡û
>W121010553
AGJH01000057
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
634
559
-
Thr
GGT
[ENA]
¡û
>C131003240
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1740249
1740324
+
Thr
GGT
[Ensembl]
¡û
>C131003256
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1805711
1805786
+
Thr
GGT
[Ensembl]
¡û
>W1610781428
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
496
421
-
Thr
GGT
[ENA]
¡û
>W1710593549
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
80851
80776
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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