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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257634 (57 seq.)
>W1710991655
LPXW01000018
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
214498
214573
+
Lys
TTT
[ENA]
¡û
>W1711009435
LQQR01000047
Actinomycetota
Brevibacterium casei [LQQR]
14642
14567
-
Lys
TTT
[ENA]
¡û
>W1711096111
LTHM01000004
Actinomycetota
Brevibacterium sp. HMSC063G07 [LTHM]
107007
107080
+
Lys
TTT
[ENA]
¡û
>W1711185814
LWNS01000017
Actinomycetota
Brevibacterium sp. HMSC08F02 [LWNS]
54371
54298
-
Lys
TTT
[ENA]
¡û
>W1711187117
LWOU01000018
Actinomycetota
Brevibacterium sp. HMSC24B04 [LWOU]
54138
54063
-
Lys
TTT
[ENA]
¡û
>W1711187194
LWOW01000023
Actinomycetota
Brevibacterium sp. HMSC22B09 [LWOW]
82410
82485
+
Lys
TTT
[ENA]
¡û
>W1711187766
LWPT01000060
Actinomycetota
Brevibacterium sp. HMSC07C04 [LWPT]
26019
26092
+
Lys
TTT
[ENA]
¡û
>WENV011346
AACY020309291
Marine microbial communities from Global Ocean Sampling (GOS)
303
228
-
Lys
TTT
[ENA]
>C171057861
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
3641265
3641340
+
Lys
TTT
-
¡û
>w005561
AAGP01000020
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
73856
73931
+
Lys
TTT
[ENA]
¡û
>WENV180209063
OBAK01012454
[OBAK] marine metagenome; ENVO.00002150
435
362
-
Lys
TTT
[ENA]
¢þ
>W141243121
CAJD01000022
Actinomycetota
Brevibacterium ravenspurgense 5401308 [CAJD]
37443
37518
+
Lys
TTT
[ENA]
¡û
>WENV182644256
OJLW01016623
[OJLW] metagenome; surface
147
74
-
Lys
TTT
[ENA]
¢þ
>W141282889
JAJB01000020
Actinomycetota
Brevibacterium sp. VCM10 [JAJB]
20236
20311
+
Lys
TTT
[ENA]
¡û
>WENV170924327
MDTG01064210
[MDTG] marine metagenome; seawater
12545
12472
-
Lys
TTT
[ENA]
¢þ
>C191031864
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
3809304
3809378
+
Lys
TTT
-
¡û
>C191031912
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
3553245
3553319
+
Lys
TTT
-
¡û
>C191031960
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
3451603
3451677
+
Lys
TTT
-
¡û
>C191032007
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
3488779
3488853
+
Lys
TTT
-
¡û
>C191032055
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
3738780
3738854
+
Lys
TTT
-
¡û
>WENV025360
AACY020882016
Marine microbial communities from Global Ocean Sampling (GOS)
426
349
-
Lys
TTT
[ENA]
>W1910181628
BJME01000006
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
149426
149352
-
Lys
TTT
[ENA]
¡û
>W1910442420
FWFF01000020
Actinomycetota
Brevibacterium yomogidense B Co 03.10 [FWFF]
122986
123062
+
Lys
TTT
[ENA]
¡û
>W1910499976
FXYX01000001
Actinomycetota
Brevibacterium iodinum ATCC 49514 [FXYX]
450679
450753
+
Lys
TTT
[ENA]
¡û
>W1910500050
FXYY01000008
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
141319
141394
+
Lys
TTT
[ENA]
¡û
>W1910500069
FXYZ01000001
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
189155
189229
+
Lys
TTT
[ENA]
¡û
>W1910500175
FXZB01000004
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
25206
25280
+
Lys
TTT
[ENA]
¡û
>W1910500296
FXZD01000009
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
7114
7188
+
Lys
TTT
[ENA]
¡û
>W1910500345
FXZE01000023
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
31201
31127
-
Lys
TTT
[ENA]
¡û
>W1910500396
FXZF01000055
Actinomycetota
Brevibacterium sp. Mu109 [FXZF]
458
383
-
Lys
TTT
[ENA]
¡û
>W1910500441
FXZG01000031
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
818
744
-
Lys
TTT
[ENA]
¡û
>W1910500473
FXZH01000015
Actinomycetota
Brevibacterium sp. 239c [FXZH]
51581
51507
-
Lys
TTT
[ENA]
¡û
>W1910500509
FXZI01000002
Actinomycetota
Brevibacterium aurantiacum [FXZI]
310762
310837
+
Lys
TTT
[ENA]
¡û
>W1910500656
FXZM01000005
Actinomycetota
Brevibacterium jeotgali SJ5-8 [FXZM]
155916
155991
+
Lys
TTT
[ENA]
¡û
>W1911203115
NRGO01000004
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
333062
333136
+
Lys
TTT
[ENA]
¡û
>W1911203175
NRGP01000005
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
140390
140464
+
Lys
TTT
[ENA]
¡û
>W1911203238
NRGQ01000018
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
1715
1641
-
Lys
TTT
[ENA]
¡û
>W1911203585
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
1191958
1192032
+
Lys
TTT
[ENA]
¡û
>W1911203808
NRHA01000011
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
149333
149259
-
Lys
TTT
[ENA]
¡û
>W1911203859
NRHB01000009
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
138392
138318
-
Lys
TTT
[ENA]
¡û
>W1911532912
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
1291609
1291535
-
Lys
TTT
[ENA]
¡û
>W1911594964
PNFZ01000003
Actinomycetota
Brevibacterium luteolum UMB0680 [PNFZ]
281857
281932
+
Lys
TTT
[ENA]
¡û
>W1911596769
PNHK01000003
Actinomycetota
Brevibacterium paucivorans UMB1301 [PNHK]
192664
192737
+
Lys
TTT
[ENA]
¡û
>W1911696944
QNGF01000036
Actinomycetota
Brevibacterium casei S51 [QNGF]
2533
2608
+
Lys
TTT
[ENA]
¡û
>W1810057067
PDHL01000051
Actinomycetota
Brevibacterium epidermidis EZ-K02 [PDHL]
103638
103712
+
Lys
TTT
[ENA]
¡û
>W1810186008
PKGO01000004
Actinomycetota
Brevibacterium ravenspurgense UMB0426 [PKGO]
66582
66657
+
Lys
TTT
[ENA]
¡û
>W1810721483
QNSB01000004
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
277012
277087
+
Lys
TTT
[ENA]
¡û
>W1810756528
QPGC01000008
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
2172
2098
-
Lys
TTT
[ENA]
¡û
>W1810756568
QPGD01000001
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
25082
25156
+
Lys
TTT
[ENA]
¡û
>W1810756621
QPGE01000001
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
184527
184453
-
Lys
TTT
[ENA]
¡û
>W10116446
ADNU01000039
Actinomycetota
Brevibacterium mcbrellneri ATCC 49030 [ADNU]
74
1
-
Lys
TTT
[ENA]
¡û
>W11121115
ADNU01000039
Actinomycetota
Brevibacterium mcbrellneri ATCC 49030 [ADNU]
74
1
-
Lys
TTT
[ENA]
¡û
>W11177838
AGBX01000001
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
112317
112242
-
Lys
TTT
[ENA]
¡û
>C161078907
CP014869
Actinomycetota
Brevibacterium linens BS258 [CP014869]
3441556
3441631
+
Lys
TTT
[Ensembl]
¡û
>W1610846270
LPXW01000018
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
214498
214573
+
Lys
TTT
[ENA]
¡û
>W1610846311
LPXX01000007
Actinomycetota
Brevibacterium ravenspurgense 5401308 = CCUG 53855 [LPXX]
111459
111534
+
Lys
TTT
[ENA]
¡û
>W1610857955
LQQR01000047
Actinomycetota
Brevibacterium casei [LQQR]
14642
14567
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK