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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257715 (30 seq.)
>C181143160
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
987078
987151
+
His
GTG
-
¡û
>W1910496493
FXUT01000001
Bacillota
Listeria costaricensis CLIP 2016/00682 [FXUT]
1437
1510
+
His
GTG
[ENA]
¡û
>W1910583212
JXJU01000007
Bacillota
Lactococcus fujiensis JCM 16395 [JXJU]
222
296
+
His
GTG
[ENA]
¡û
>W1910899757
NGJY01000001
Bacillota
Vagococcus fessus CCUG 41755 [NGJY]
898
972
+
His
GTG
[ENA]
¡û
>W2010416247
FXUT01000001
Bacillota
Listeria costaricensis CLIP 2016/00682 [FXUT]
1437
1510
+
His
GTG
[ENA]
¡û
>W2010762930
JXJU01000007
Bacillota
Lactococcus fujiensis JCM 16395 [JXJU]
222
296
+
His
GTG
[ENA]
¡û
>W2010958657
NGJY01000001
Bacillota
Vagococcus fessus CCUG 41755 [NGJY]
800
874
+
His
GTG
[ENA]
¡û
>W2010958658
NGJY01000001
Bacillota
Vagococcus fessus CCUG 41755 [NGJY]
898
972
+
His
GTG
[ENA]
¡û
>W2012125574
VRSZ01000005
Bacillota
Lactococcus sp. dk310 [VRSZ]
125693
125619
-
His
GTG
[ENA]
¡û
>W2012125628
VRTA01000006
Bacillota
Lactococcus sp. dk322 [VRTA]
125693
125619
-
His
GTG
[ENA]
¡û
>W2012341169
WITI01000005
Bacillota
Lactococcus sp. dk101 [WITI]
125693
125619
-
His
GTG
[ENA]
¡û
>W2012341228
WITJ01000024
Bacillota
Lactococcus hircilactis DSM 28960 [WITJ]
314
388
+
His
GTG
[ENA]
¡û
>W2110305328
JADDIU010000032
Bacillota
Bacillus renqingensis REN2 [JADDIU]
934
1009
+
His
GTG
[ENA]
¡û
>C211059774
CP043431
Bacillota
Weissella koreensis SK [CP043431]
945728
945801
+
His
GTG
-
¡û
>C211137933
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
894990
895063
+
His
GTG
-
¡û
>C241138506
CP049886
Bacillota
Vagococcus coleopterorum HDW17A [CP049886]
1298797
1298723
-
His
GTG
-
¡û
>C241138507
CP049886
Bacillota
Vagococcus coleopterorum HDW17A [CP049886]
1298695
1298621
-
His
GTG
-
¡û
>C241138628
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1551213
1551140
-
His
GTG
-
¡û
>C241219947
CP110232
Bacillota
Vagococcus intermedius STAA11 [CP110232]
822669
822742
+
His
GTG
-
¡û
>C241219948
CP110232
Bacillota
Vagococcus intermedius STAA11 [CP110232]
822763
822837
+
His
GTG
-
¡û
>C241220008
CP110237
Bacillota
Vagococcus intermedius STAA25 [CP110237]
822660
822733
+
His
GTG
-
¡û
>C241220009
CP110237
Bacillota
Vagococcus intermedius STAA25 [CP110237]
822754
822828
+
His
GTG
-
¡û
>C241378275
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
965063
965136
+
His
GTG
-
¡û
>WENV11100338
AEKF01000082
Food metagenome, Jonggazip commercial cabbage kimchi
1522
1449
-
His
GTG
[ENA]
¡û
>C11123744
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
922692
922765
+
His
GTG
[Ensembl]
¡û
>W1610044310
BBAL01000008
Bacillota
Lactococcus fujiensis JCM 16395 [BBAL]
119468
119394
-
His
GTG
[ENA]
¡û
>W121082009
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
95432
95505
+
His
GTG
[ENA]
¡û
>W1610528862
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
58674
58747
+
His
GTG
[ENA]
¡û
>W1710041470
BBAL01000008
Bacillota
Lactococcus fujiensis JCM 16395 [BBAL]
119468
119394
-
His
GTG
[ENA]
¡û
>W1710630452
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
58674
58747
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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