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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257832 (90 seq.)
>W1710889303
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
724259
724334
+
Lys
TTT
[ENA]
¡û
>W1710889322
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1279307
1279380
+
Lys
TTT
[ENA]
¡û
>W1711767866
MVBC01000001
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
102338
102265
-
Lys
TTT
[ENA]
¡û
>W1711767900
MVBC01000024
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
20004
19931
-
Lys
TTT
[ENA]
¡û
>C171104407
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
3726709
3726634
-
Lys
TTT
-
¡û
>C171104411
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
2544396
2544323
-
Lys
TTT
-
¡û
>W141212139
AZQN01000001
Bacteroidota
Dyadobacter tibetensis Y620-1 [AZQN]
534110
534185
+
Lys
TTT
[ENA]
¡û
>WENV183726758
PJTO01000132
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
22755
22682
-
Lys
TTT
[ENA]
¡û
>WENV183726759
PJTO01000132
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
276
203
-
Lys
TTT
[ENA]
¡û
>WENV183728593
PJTQ01000166
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
22755
22682
-
Lys
TTT
[ENA]
¡û
>WENV183728594
PJTQ01000166
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
276
203
-
Lys
TTT
[ENA]
¡û
>WENV183737273
PJUD01002414
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5701
5774
+
Lys
TTT
[ENA]
¡û
>WENV183739960
PJUF01000101
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
22755
22682
-
Lys
TTT
[ENA]
¡û
>WENV183739961
PJUF01000101
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
276
203
-
Lys
TTT
[ENA]
¡û
>WENV170156246
CEOI01001704
[CEOI] marine metagenome genome assembly TARA_036_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
176
249
+
Lys
TTT
[ENA]
¡û
>WENV170165472
CEON01144947
[CEON] marine metagenome genome assembly TARA_034_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
391
464
+
Lys
TTT
[ENA]
¡û
>WENV170166337
CEOO01053312
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
41
114
+
Lys
TTT
[ENA]
¡û
>WENV170596032
FUFK012077912
[FUFK] metagenome; unknown
91
164
+
Lys
TTT
[ENA]
¡û
>C181069073
CP022585
Bacteroidota
Candidatus Fluviicola riflensis [CP022585]
1506445
1506370
-
Lys
TTT
-
¡û
>C191087846
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
71903
71976
+
Lys
TTT
-
¡û
>C191087850
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
538024
538097
+
Lys
TTT
-
¡û
>C191183804
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
3725027
3725100
+
Lys
TTT
-
¡û
>W1910912848
NHPP01000001
Bacteroidota
Siphonobacter sp. BAB-5404 [NHPP]
130099
130026
-
Lys
TTT
[ENA]
¡û
>W1910912849
NHPP01000001
Bacteroidota
Siphonobacter sp. BAB-5404 [NHPP]
129924
129851
-
Lys
TTT
[ENA]
¡û
>W1910912850
NHPP01000001
Bacteroidota
Siphonobacter sp. BAB-5404 [NHPP]
129798
129725
-
Lys
TTT
[ENA]
¡û
>W1910939691
NJAG01000002
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
44985
45060
+
Lys
TTT
[ENA]
¡û
>W1910939692
NJAG01000002
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
45153
45226
+
Lys
TTT
[ENA]
¡û
>W1911136266
NOUY01000009
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
26444
26371
-
Lys
TTT
[ENA]
¡û
>W1810306002
PTRA01000001
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
2266951
2266876
-
Lys
TTT
[ENA]
¡û
>W1810306003
PTRA01000001
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
2266786
2266711
-
Lys
TTT
[ENA]
¡û
>W1810306004
PTRA01000001
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
2266621
2266548
-
Lys
TTT
[ENA]
¡û
>W1810625892
QHKM01000003
Bacteroidota
Hymenobacter edaphi NL [QHKM]
32095
32168
+
Lys
TTT
[ENA]
¡û
>W1810625917
QHKM01000009
Bacteroidota
Hymenobacter edaphi NL [QHKM]
1995
1922
-
Lys
TTT
[ENA]
¡û
>W1810678964
QKNS01000003
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
289377
289452
+
Lys
TTT
[ENA]
¡û
>W1810678965
QKNS01000003
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
299413
299488
+
Lys
TTT
[ENA]
¡û
>SRA1016461
SRR023846.511042
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
113
+
Lys
TTT
[SRA]
>W2010700800
JACHGF010000002
Bacteroidota
Rhabdobacter roseus DSM 105074 [JACHGF]
355143
355216
+
Lys
TTT
[ENA]
¡û
>W2010700801
JACHGF010000002
Bacteroidota
Rhabdobacter roseus DSM 105074 [JACHGF]
355404
355477
+
Lys
TTT
[ENA]
¡û
>W2010700863
JACHGG010000007
Bacteroidota
Hymenobacter luteus DSM 26718 [JACHGG]
105059
104984
-
Lys
TTT
[ENA]
¡û
>W2010700864
JACHGG010000007
Bacteroidota
Hymenobacter luteus DSM 26718 [JACHGG]
94837
94762
-
Lys
TTT
[ENA]
¡û
>W2010711773
JACHNV010000007
Bacteroidota
Hymenobacter latericoloratus DSM 26701 [JACHNV]
69099
69174
+
Lys
TTT
[ENA]
¡û
>W2010711774
JACHNV010000007
Bacteroidota
Hymenobacter latericoloratus DSM 26701 [JACHNV]
79321
79396
+
Lys
TTT
[ENA]
¡û
>W2010861736
MGWN01000007
Bacteroidota
Fluviicola sp. RIFCSPHIGHO2_12_FULL_43_24 [MGWN]
308354
308429
+
Lys
TTT
[ENA]
¡û
>W2010966527
NHPP01000001
Bacteroidota
Siphonobacter sp. BAB-5404 [NHPP]
130099
130026
-
Lys
TTT
[ENA]
¡û
>W2010966528
NHPP01000001
Bacteroidota
Siphonobacter sp. BAB-5404 [NHPP]
129924
129851
-
Lys
TTT
[ENA]
¡û
>W2010966529
NHPP01000001
Bacteroidota
Siphonobacter sp. BAB-5404 [NHPP]
129798
129725
-
Lys
TTT
[ENA]
¡û
>W2010983008
NJAG01000002
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
44985
45060
+
Lys
TTT
[ENA]
¡û
>W2010983009
NJAG01000002
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
45153
45226
+
Lys
TTT
[ENA]
¡û
>W2011493510
RWIS01000005
Bacteroidota
Hymenobacter sp. 9PBR-2 [RWIS]
270016
270089
+
Lys
TTT
[ENA]
¡û
>W2011493516
RWIS01000011
Bacteroidota
Hymenobacter sp. 9PBR-2 [RWIS]
19648
19721
+
Lys
TTT
[ENA]
¡û
>W2011498486
RXOF01000001
Bacteroidota
Hymenobacter gummosus KCTC 52166 [RXOF]
320402
320329
-
Lys
TTT
[ENA]
¡û
>W2011498511
RXOF01000010
Bacteroidota
Hymenobacter gummosus KCTC 52166 [RXOF]
122376
122303
-
Lys
TTT
[ENA]
¡û
>W2011678414
SRKZ01000004
Bacteroidota
Hymenobacter wooponensis JCM 19491 [SRKZ]
527347
527274
-
Lys
TTT
[ENA]
¡û
>W2011678415
SRKZ01000004
Bacteroidota
Hymenobacter wooponensis JCM 19491 [SRKZ]
526301
526228
-
Lys
TTT
[ENA]
¡û
>W2011678456
SRLA01000003
Bacteroidota
Hymenobacter sp. 92R-1 [SRLA]
529791
529718
-
Lys
TTT
[ENA]
¡û
>W2011678457
SRLA01000003
Bacteroidota
Hymenobacter sp. 92R-1 [SRLA]
528755
528682
-
Lys
TTT
[ENA]
¡û
>W2011961152
VAJM01000002
Bacteroidota
Hymenobacter jeollabukensis 1-3-3-8 [VAJM]
750462
750389
-
Lys
TTT
[ENA]
¡û
>W2011961185
VAJM01000011
Bacteroidota
Hymenobacter jeollabukensis 1-3-3-8 [VAJM]
139571
139498
-
Lys
TTT
[ENA]
¡û
>W2012140551
VTHL01000001
Bacteroidota
Hymenobacter sp. KIGAM108 [VTHL]
147417
147490
+
Lys
TTT
[ENA]
¡û
>W2012146828
VTWU01000007
Bacteroidota
Hymenobacter sp. M3 [VTWU]
285676
285749
+
Lys
TTT
[ENA]
¡û
>W2110025675
BMHT01000008
Bacteroidota
Hymenobacter cavernae CGMCC 1.15197 [BMHT]
9757
9682
-
Lys
TTT
[ENA]
¡û
>W2110251315
JACSJJ010000002
Bacteroidota
Hymenobacter sp. BT491 [JACSJJ]
213147
213220
+
Lys
TTT
[ENA]
¡û
>W2110298018
JADALH010000001
Bacteroidota
Rufibacter sp. LB8 [JADALH]
71092
71165
+
Lys
TTT
[ENA]
¡û
>W2110298059
JADALI010000001
Bacteroidota
Rufibacter sp. LB8 [JADALI]
44557
44630
+
Lys
TTT
[ENA]
¡û
>W2110298100
JADALJ010000001
Bacteroidota
Rufibacter sp. LB8 [JADALJ]
71084
71157
+
Lys
TTT
[ENA]
¡û
>W2110298141
JADALK010000001
Bacteroidota
Rufibacter sp. LB8 [JADALK]
71405
71478
+
Lys
TTT
[ENA]
¡û
>W2110298195
JADALL010000005
Bacteroidota
Rufibacter sp. LB8 [JADALL]
44594
44667
+
Lys
TTT
[ENA]
¡û
>W2110298236
JADALM010000004
Bacteroidota
Rufibacter sp. LB8 [JADALM]
301702
301775
+
Lys
TTT
[ENA]
¡û
>W2110298275
JADALN010000002
Bacteroidota
Rufibacter sp. LB8 [JADALN]
311693
311620
-
Lys
TTT
[ENA]
¡û
>W2110298325
JADALO010000001
Bacteroidota
Rufibacter sp. LB8 [JADALO]
1365754
1365681
-
Lys
TTT
[ENA]
¡û
>W2110298335
JADALP010000001
Bacteroidota
Rufibacter sp. LB8 [JADALP]
311690
311617
-
Lys
TTT
[ENA]
¡û
>W2110298390
JADALQ010000007
Bacteroidota
Rufibacter sp. LB8 [JADALQ]
311684
311611
-
Lys
TTT
[ENA]
¡û
>W2110395381
JADWYK010000001
Bacteroidota
Hymenobacter guriensis BT594 [JADWYK]
32949
32876
-
Lys
TTT
[ENA]
¡û
>W2110667677
JAHZTD010000001
Bacteroidota
Hymenobacter sp. HSC-4F20 [JAHZTD]
276958
277031
+
Lys
TTT
[ENA]
¡û
>W2110667678
JAHZTD010000001
Bacteroidota
Hymenobacter sp. HSC-4F20 [JAHZTD]
286931
287004
+
Lys
TTT
[ENA]
¡û
>W2110714259
JAIZZH010000001
Bacteroidota
Hymenobacter sp. BT728 [JAIZZH]
552839
552912
+
Lys
TTT
[ENA]
¡û
>W2110714270
JAIZZH010000002
Bacteroidota
Hymenobacter sp. BT728 [JAIZZH]
748116
748043
-
Lys
TTT
[ENA]
¡û
>C231528141
CP110136
Bacteroidota
Hymenobacter sp. YIM 151858-1 [CP110136]
84385
84458
+
Lys
TTT
-
¡û
>C231528145
CP110136
Bacteroidota
Hymenobacter sp. YIM 151858-1 [CP110136]
569494
569567
+
Lys
TTT
-
¡û
>C231528189
CP110139
Bacteroidota
Hymenobacter sp. YIM 151500-1 [CP110139]
586529
586602
+
Lys
TTT
-
¡û
>C231528190
CP110139
Bacteroidota
Hymenobacter sp. YIM 151500-1 [CP110139]
588768
588841
+
Lys
TTT
-
¡û
>C241054992
CP040936
Bacteroidota
Hymenobacter sp. DG01 [CP040936]
537949
538024
+
Lys
TTT
-
¡û
>C241054993
CP040936
Bacteroidota
Hymenobacter sp. DG01 [CP040936]
548113
548188
+
Lys
TTT
-
¡û
>C241122099
CP047647
Bacteroidota
Hymenobacter busanensis BT182 [CP047647]
162459
162532
+
Lys
TTT
-
¡û
>C241147886
CP050954
Bacteroidota
Hymenobacter sp. BT18 [CP050954]
860976
860903
-
Lys
TTT
-
¡û
>C11118885
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
6198916
6198843
-
Lys
TTT
[Ensembl]
¡û
>C161003246
CP004371
Bacteroidota
Flammeovirgaceae bacterium 311 [CP004371]
4860601
4860676
+
Lys
TTT
[Ensembl]
¡û
>W1610749681
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
724259
724334
+
Lys
TTT
[ENA]
¡û
>W1610749700
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1279307
1279380
+
Lys
TTT
[ENA]
¡û
>W1710521851
FNGS01000005
Bacteroidota
Siphonobacter aquaeclarae [FNGS]
462175
462100
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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