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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257840 (34 seq.)
>WENV180376939
OBOM01162006
[OBOM] marine metagenome; Seawater
138
65
-
fMet
CAT
[ENA]
¡û
>WENV181222795
OFDC01000284
[OFDC] hot springs metagenome; Water
6151
6078
-
fMet
CAT
[ENA]
¡û
>WENV170275825
CERM01217780
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
74
1
-
Met
CAT
[ENA]
¡û
>WENV170399240
CEUE01001606
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
170
95
-
Met
CAT
[ENA]
¡û
>WENV170816917
MDSX01040203
[MDSX] marine metagenome; seawater
2357
2432
+
Met
CAT
[ENA]
¡û
>W1910939727
NJAG01000027
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
46570
46497
-
Met
CAT
[ENA]
¡û
>W1910939731
NJAG01000041
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
8202
8275
+
Met
CAT
[ENA]
¡û
>W1911243221
NSGJ01000001
Bacteroidota
Myroides sp. N17-2 [NSGJ]
211522
211595
+
Met
CAT
[ENA]
¡û
>W1911243222
NSGJ01000001
Bacteroidota
Myroides sp. N17-2 [NSGJ]
213032
213105
+
Met
CAT
[ENA]
¡û
>W1911243288
NSGJ01000058
Bacteroidota
Myroides sp. N17-2 [NSGJ]
265
192
-
Met
CAT
[ENA]
¡û
>W1911587301
PJQW01000011
Bacteroidota
Flavobacterium sp. J27 [PJQW]
136113
136040
-
Met
CAT
[ENA]
¡û
>W1810306017
PTRA01000004
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
331422
331495
+
Met
CAT
[ENA]
¡û
>W1810306022
PTRA01000008
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
16635
16708
+
Met
CAT
[ENA]
¡û
>SRA1026009
SRR035085.125267
454 Sequencing (SRP001806)
344
271
-
Met
CAT
[SRA]
>W2010983044
NJAG01000027
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
46570
46497
-
fMet
CAT
[ENA]
¡û
>W2010983048
NJAG01000041
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
8202
8275
+
fMet
CAT
[ENA]
¡û
>W2011068529
NSGJ01000001
Bacteroidota
Myroides sp. N17-2 [NSGJ]
211522
211595
+
fMet
CAT
[ENA]
¡û
>W2011068530
NSGJ01000001
Bacteroidota
Myroides sp. N17-2 [NSGJ]
213032
213105
+
fMet
CAT
[ENA]
¡û
>W2011068596
NSGJ01000058
Bacteroidota
Myroides sp. N17-2 [NSGJ]
265
192
-
fMet
CAT
[ENA]
¡û
>W2011196647
PJQW01000011
Bacteroidota
Flavobacterium sp. J27 [PJQW]
136113
136040
-
fMet
CAT
[ENA]
¡û
>W2110028986
BMKK01000014
Bacteroidota
Emticicia aquatilis CGMCC 1.15958 [BMKK]
104846
104773
-
fMet
CAT
[ENA]
¡û
>WENV033000
AACY021491635
Marine microbial communities from Global Ocean Sampling (GOS)
727
804
+
Met
CAT
[ENA]
>W2110409025
JAEHFJ010000005
Bacteroidota
Aureibaculum sp. A20 [JAEHFJ]
293907
293834
-
fMet
CAT
[ENA]
¡û
>C231293551
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
2461475
2461402
-
fMet
CAT
-
¡û
>C231293553
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
2461263
2461190
-
fMet
CAT
-
¡û
>C231293554
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
2461161
2461088
-
fMet
CAT
-
¡û
>C231293555
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
2434896
2434823
-
fMet
CAT
-
¡û
>C231293556
CP091285
Bacteroidota
Flavobacterium jumunjinense HME7102 [CP091285]
2434794
2434721
-
fMet
CAT
-
¡û
>C231524764
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
2435520
2435447
-
fMet
CAT
-
¡û
>C231524766
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
2435308
2435235
-
fMet
CAT
-
¡û
>C231524767
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
2435206
2435133
-
fMet
CAT
-
¡û
>C231524768
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
2408940
2408867
-
fMet
CAT
-
¡û
>C231524769
CP109996
Bacteroidota
Flavobacterium sp. N1861 [CP109996]
2408838
2408765
-
fMet
CAT
-
¡û
>C121003585
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
1711746
1711671
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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