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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257917 (103 seq.)
>W1710791426
LJNT01000048
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA09 [LJNT]
206
131
-
Ala
GGC
[ENA]
¡û
>W131176827
ARKI01000054
Alphaproteobacteria
Elioraea tepidiphila DSM 17972 [ARKI]
146648
146573
-
Ala
GGC
[ENA]
¡û
>C171100622
CP019875
Alphaproteobacteria
Komagataeibacter nataicola RZS01 [CP019875]
1893254
1893329
+
Ala
GGC
-
¡û
>C171119404
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
2484896
2484971
+
Ala
GGC
-
¡û
>WENV180013469
FMSI01088074
[FMSI] soil metagenome; Soil
819
744
-
Ala
GGC
[ENA]
¡û
>WENV180396721
OBPV01070729
[OBPV] marine metagenome; ENVO:00002010
357
282
-
Ala
GGC
[ENA]
¡û
>WENV181234010
OFET01000759
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
524
449
-
Ala
GGC
[ENA]
¡û
>WENV181234672
OFEU01001170
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
7191
7266
+
Ala
GGC
[ENA]
¡û
>WENV181407498
OGCG01032808
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
963
888
-
Ala
GGC
[ENA]
¡û
>WENV181407506
OGCG01033973
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1
76
+
Ala
GGC
[ENA]
¡û
>WENV181407532
OGCG01036983
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
77
2
-
Ala
GGC
[ENA]
¡û
>W141213969
AZSJ01000003
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
1458570
1458645
+
Ala
GGC
[ENA]
¡û
>W141224607
BAIO01000131
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
2881
2806
-
Ala
GGC
[ENA]
¡û
>WENV170002547
AGTN01064447
[AGTN] bioreactor metagenome; poplar biomass
365
290
-
Ala
GGC
[ENA]
¡û
>W141401971
JDTI01000003
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
51348
51273
-
Ala
GGC
[ENA]
¡û
>C181103438
CP024644
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 2955 [CP024644]
3441537
3441462
-
Ala
GGC
-
¡û
>C181175708
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
3600340
3600415
+
Ala
GGC
-
¡û
>C191023983
CP023036
Alphaproteobacteria
Komagataeibacter saccharivorans CV1 [CP023036]
1197484
1197409
-
Ala
GGC
-
¡û
>C191150956
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2079530
2079605
+
Ala
GGC
-
¡û
>W1910015219
BDLU01000050
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
19359
19434
+
Ala
GGC
[ENA]
¡û
>W1910015267
BDLW01000025
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
86183
86258
+
Ala
GGC
[ENA]
¡û
>W1910694751
MDTO01000323
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
41538
41613
+
Ala
GGC
[ENA]
¡û
>W1910695667
MDVZ01000285
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
16703
16628
-
Ala
GGC
[ENA]
¡û
>W1910929238
NIRT01000006
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
48692
48617
-
Ala
GGC
[ENA]
¡û
>W1910972023
NKCY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
120388
120463
+
Ala
GGC
[ENA]
¡û
>W1910990425
NKTX01000004
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
92698
92773
+
Ala
GGC
[ENA]
¡û
>W1910990466
NKTY01000002
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
162372
162297
-
Ala
GGC
[ENA]
¡û
>W1910990509
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
65719
65794
+
Ala
GGC
[ENA]
¡û
>W1910990573
NKUA01000006
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
97771
97846
+
Ala
GGC
[ENA]
¡û
>W1910990619
NKUB01000004
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
55334
55409
+
Ala
GGC
[ENA]
¡û
>W1910990675
NKUC01000012
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
11453
11528
+
Ala
GGC
[ENA]
¡û
>W1911495118
OBMP01000005
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
64230
64305
+
Ala
GGC
[ENA]
¡û
>W1911538676
OMOQ01000005
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
42641
42716
+
Ala
GGC
[ENA]
¡û
>W1911575837
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
1023612
1023537
-
Ala
GGC
[ENA]
¡û
>W1911717685
QQBI01000005
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
93160
93085
-
Ala
GGC
[ENA]
¡û
>W1810700579
QMDI01000006
Alphaproteobacteria
Elioraea thermophila YIM 72297 [QMDI]
656799
656874
+
Ala
GGC
[ENA]
¡û
>W1810761136
QPLK01000001
Alphaproteobacteria
Rhodovulum sp. 12E13 [QPLK]
300656
300581
-
Ala
GGC
[ENA]
¡û
>W1810894158
QUWV01000029
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
51268
51343
+
Ala
GGC
[ENA]
¡û
>C151006041
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
3385376
3385301
-
Ala
GGC
[Ensembl]
¡û
>W2010077851
BDLU01000050
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
19359
19434
+
Ala
GGC
[ENA]
¡û
>W2010077899
BDLW01000025
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
86183
86258
+
Ala
GGC
[ENA]
¡û
>W2010604358
JABJWC010000003
Alphaproteobacteria
Komagataeibacter melomenusus AV436 [JABJWC]
83797
83872
+
Ala
GGC
[ENA]
¡û
>W2010651939
JABXXS010000008
Alphaproteobacteria
Komagataeibacter swingsii LMG 25 [JABXXS]
20717
20792
+
Ala
GGC
[ENA]
¡û
>W2010713578
JACHUU010000006
Alphaproteobacteria
Komagataeibacter europaeus GH1 [JACHUU]
51521
51596
+
Ala
GGC
[ENA]
¡û
>W2010731409
JACIJA010000003
Alphaproteobacteria
Komagataeibacter kakiaceti DSM 24098 [JACIJA]
279281
279206
-
Ala
GGC
[ENA]
¡û
>W2010828344
MDTO01000323
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
41538
41613
+
Ala
GGC
[ENA]
¡û
>W2010829260
MDVZ01000285
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
16703
16628
-
Ala
GGC
[ENA]
¡û
>W2010979481
NIRT01000006
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
48692
48617
-
Ala
GGC
[ENA]
¡û
>W2010990859
NKCY01000003
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
120388
120463
+
Ala
GGC
[ENA]
¡û
>W2010995452
NKTX01000004
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
92698
92773
+
Ala
GGC
[ENA]
¡û
>W2010995493
NKTY01000002
Alphaproteobacteria
Komagataeibacter saccharivorans LMG 1582 [NKTY]
162372
162297
-
Ala
GGC
[ENA]
¡û
>W2010995536
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
65719
65794
+
Ala
GGC
[ENA]
¡û
>W2010995600
NKUA01000006
Alphaproteobacteria
Komagataeibacter sucrofermentans LMG 18788 [NKUA]
97771
97846
+
Ala
GGC
[ENA]
¡û
>W2010995646
NKUB01000004
Alphaproteobacteria
Komagataeibacter swingsii LMG 22125 [NKUB]
55334
55409
+
Ala
GGC
[ENA]
¡û
>W2010995702
NKUC01000012
Alphaproteobacteria
Komagataeibacter xylinus LMG 1515 [NKUC]
11453
11528
+
Ala
GGC
[ENA]
¡û
>W2011284884
QQBI01000005
Alphaproteobacteria
Komagataeibacter xylinus K2G30 [QQBI]
93160
93085
-
Ala
GGC
[ENA]
¡û
>W2011338814
QYAZ01000001
Alphaproteobacteria
Komagataeibacter medellinensis ID13488 [QYAZ]
1394123
1394198
+
Ala
GGC
[ENA]
¡û
>W2012039104
VIKA01000058
Alphaproteobacteria
Elioraea sp. Yellowstone [VIKA]
5017
5092
+
Ala
GGC
[ENA]
¡û
>W2012197316
VWPK01000030
Alphaproteobacteria
Rhodovastum atsumiense DSM 21279 [VWPK]
7160
7085
-
Ala
GGC
[ENA]
¡û
>W2110029407
BMKS01000014
Alphaproteobacteria
Caldovatus sediminis CGMCC 1.16330 [BMKS]
27428
27503
+
Ala
GGC
[ENA]
¡û
>W2110138092
JAAEDL010000011
Alphaproteobacteria
Roseomonas eburnea LMG 31228 [JAAEDL]
125076
125001
-
Ala
GGC
[ENA]
¡û
>W2110180857
JABLUU010000002
Alphaproteobacteria
Komagataeibacter oboediens IMBG 311 [JABLUU]
271552
271477
-
Ala
GGC
[ENA]
¡û
>W2110180907
JABLUV010000004
Alphaproteobacteria
Komagataeibacter oboediens IMBG 314 [JABLUV]
167104
167029
-
Ala
GGC
[ENA]
¡û
>W2110638164
JAHQRM010000007
Alphaproteobacteria
Komagataeibacter oboediens SI3053 [JAHQRM]
66419
66494
+
Ala
GGC
[ENA]
¡û
>W2110640028
JAHRDS010000003
Alphaproteobacteria
Komagataeibacter melomenusus SI3083 [JAHRDS]
83798
83873
+
Ala
GGC
[ENA]
¡û
>W2110640127
JAHRDU010000002
Alphaproteobacteria
Komagataeibacter oboediens AV371 [JAHRDU]
86776
86701
-
Ala
GGC
[ENA]
¡û
>W2110667902
JAHZUY010000014
Alphaproteobacteria
Caldovatus sp. SYSU G05006 [JAHZUY]
38209
38134
-
Ala
GGC
[ENA]
¡û
>W2110680656
JAIHLR010000085
Alphaproteobacteria
Komagataeibacter rhaeticus K15 [JAIHLR]
31571
31646
+
Ala
GGC
[ENA]
¡û
>C211146460
CP061369
Alphaproteobacteria
Komagataeibacter rhaeticus ENS9b [CP061369]
3207840
3207915
+
Ala
GGC
-
¡û
>C231602497
CP117861
Alphaproteobacteria
Komagataeibacter oboediens NCIB 8034 [CP117861]
684800
684875
+
Ala
GGC
-
¡û
>C231615079
CP118675
Alphaproteobacteria
Komagataeibacter nataicola DS12 [CP118675]
2974475
2974550
+
Ala
GGC
-
¡û
>C231654971
OW485601
Alphaproteobacteria
Rhodovastum atsumiense G2-11 [OW485601]
2161881
2161806
-
Ala
GGC
-
¡û
>W2110778560
VWPI01000124
Alphaproteobacteria
Komagataeibacter sp. FXV3 [VWPI]
53323
53398
+
Ala
GGC
[ENA]
¡û
>C241056833
CP041348
Alphaproteobacteria
Komagataeibacter xylinus CGMCC 17276 [CP041348]
1195338
1195263
-
Ala
GGC
-
¡û
>C241080506
CP043481
Alphaproteobacteria
Komagataeibacter oboediens BPZTR01 [CP043481]
1757274
1757349
+
Ala
GGC
-
¡û
>C241141827
CP050139
Alphaproteobacteria
Komagataeibacter rhaeticus ENS 9a1a [CP050139]
3182038
3182113
+
Ala
GGC
-
¡û
>W2130000363
BDLT01000042
Alphaproteobacteria
Komagataeibacter oboediens MSKU3 [BDLT]
92726
92801
+
Ala
GGC
[ENA]
¡û
>C241346530
CP139093
Alphaproteobacteria
Komagataeibacter rhaeticus CGMCC 2955 [CP139093]
2474014
2473939
-
Ala
GGC
-
¡û
>W2310008749
BAQH01000010
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [BAQH]
51550
51625
+
Ala
GGC
[ENA]
¡û
>W2310008940
BAQM01000036
Alphaproteobacteria
Komagataeibacter nataicola NRIC 0616 [BAQM]
48644
48569
-
Ala
GGC
[ENA]
¡û
>W2310008999
BAQO01000045
Alphaproteobacteria
Komagataeibacter rhaeticus DSM 16663 [BAQO]
11251
11176
-
Ala
GGC
[ENA]
¡û
>W2310009066
BAQQ01000007
Alphaproteobacteria
Komagataeibacter saccharivorans NRIC 0614 [BAQQ]
74245
74320
+
Ala
GGC
[ENA]
¡û
>W2310009103
BAQR01000004
Alphaproteobacteria
Komagataeibacter sucrofermentans DSM 15973 [BAQR]
30164
30239
+
Ala
GGC
[ENA]
¡û
>W2310009174
BAQS01000099
Alphaproteobacteria
Komagataeibacter swingsii DSM 16373 [BAQS]
72167
72092
-
Ala
GGC
[ENA]
¡û
>C11109971
AP012159
Alphaproteobacteria
Komagataeibacter medellinensis NBRC 3288 [AP012159]
2008396
2008471
+
Ala
GGC
[Ensembl]
¡û
>W1511318942
JPYW01000714
Alphaproteobacteria
Acidicaldus organivorans DX-1 [JPYW]
749
674
-
Ala
GGC
[ENA]
¡û
>W1511431865
JUFX01000089
Alphaproteobacteria
Komagataeibacter intermedius AF2 [JUFX]
73410
73485
+
Ala
GGC
[ENA]
¡û
>W11157660
AFCH01000032
Alphaproteobacteria
Gluconacetobacter sp. SXCC-1 [AFCH]
111111
111036
-
Ala
GGC
[ENA]
¡û
>W11186761
CADP01000004
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
27084
27009
-
Ala
GGC
[ENA]
¡û
>W11186843
CADR01000019
Alphaproteobacteria
Komagataeibacter europaeus LMG 18494 [CADR]
53737
53812
+
Ala
GGC
[ENA]
¡û
>W11186878
CADS01000004
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
108117
108192
+
Ala
GGC
[ENA]
¡û
>W11186946
CADT01000005
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
91583
91508
-
Ala
GGC
[ENA]
¡û
>W1610041010
BANB01000291
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
7064
7139
+
Ala
GGC
[ENA]
¡û
>W1610041119
BANF01000012
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
82680
82605
-
Ala
GGC
[ENA]
¡û
>W1610041251
BANI01000035
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
36034
36109
+
Ala
GGC
[ENA]
¡û
>W1610041306
BANJ01000022
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
64908
64983
+
Ala
GGC
[ENA]
¡û
>W1610070895
BCTP01000030
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
32767
32692
-
Ala
GGC
[ENA]
¡û
>W1610655351
LJNT01000048
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA09 [LJNT]
206
131
-
Ala
GGC
[ENA]
¡û
>W1710038208
BANB01000291
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
7064
7139
+
Ala
GGC
[ENA]
¡û
>W1710038317
BANF01000012
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
82680
82605
-
Ala
GGC
[ENA]
¡û
>W1710038449
BANI01000035
Alphaproteobacteria
Komagataeibacter europaeus NBRC 3261 [BANI]
36034
36109
+
Ala
GGC
[ENA]
¡û
>W1710038504
BANJ01000022
Alphaproteobacteria
Komagataeibacter xylinus NBRC 13693 [BANJ]
64908
64983
+
Ala
GGC
[ENA]
¡û
>W1710068217
BCTP01000030
Alphaproteobacteria
Komagataeibacter xylinus NBRC 15237 [BCTP]
32767
32692
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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