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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257952 (20 seq.)
>W1711154531
LVOA01000079
Gammaproteobacteria
Escherichia coli [LVOA]
16348
16274
-
Thr
TGT
[ENA]
¡û
>W1712011587
NEMI01000041
Gammaproteobacteria
Escherichia coli [NEMI]
21410
21484
+
Thr
TGT
[ENA]
¡û
>W1712012326
NEMR01000043
Gammaproteobacteria
Escherichia coli [NEMR]
21410
21484
+
Thr
TGT
[ENA]
¡û
>W141383776
JDFV01000088
Gammaproteobacteria
Escherichia coli E1728 [JDFV]
8929
9003
+
Thr
TGT
[ENA]
¡û
>W1911068165
NMNR01000015
Gammaproteobacteria
Escherichia coli MOD1-EC6911 [NMNR]
66325
66251
-
Thr
TGT
[ENA]
¡û
>W1911092474
NNWK01000037
Gammaproteobacteria
Escherichia coli MOD1-EC6414 [NNWK]
24061
24136
+
Thr
TGT
[ENA]
¡û
>W1911092630
NNWM01000039
Gammaproteobacteria
Escherichia coli MOD1-EC6412 [NNWM]
24061
24136
+
Thr
TGT
[ENA]
¡û
>W1911101624
NOBH01000028
Gammaproteobacteria
Escherichia coli MOD1-EC5836 [NOBH]
40646
40571
-
Thr
TGT
[ENA]
¡û
>W1911107927
NOER01000017
Gammaproteobacteria
Escherichia coli MOD1-EC5297 [NOER]
2223
2298
+
Thr
TGT
[ENA]
¡û
>W1911109634
NOFP01000022
Gammaproteobacteria
Escherichia coli MOD1-EC5165 [NOFP]
29931
30006
+
Thr
TGT
[ENA]
¡û
>W1911124693
NOOT01000020
Gammaproteobacteria
Escherichia coli MOD1-EC6898 [NOOT]
32024
31950
-
Thr
TGT
[ENA]
¡û
>W1911226752
NRWQ01000008
Gammaproteobacteria
Escherichia coli A419 [NRWQ]
71129
71204
+
Thr
TGT
[ENA]
¡û
>W1911406167
NWRA01000039
Gammaproteobacteria
Escherichia coli OLC0714 [NWRA]
23896
23971
+
Thr
TGT
[ENA]
¡û
>W1911406729
NWRH01000014
Gammaproteobacteria
Escherichia coli OLC0629 [NWRH]
28252
28327
+
Thr
TGT
[ENA]
¡û
>W1911432027
NXMG01000091
Gammaproteobacteria
Escherichia coli MOD1-EC6912 [NXMG]
16606
16681
+
Thr
TGT
[ENA]
¡û
>W1911755372
QWNL01000747
Gammaproteobacteria
Escherichia coli S269 [QWNL]
32708
32633
-
Thr
TGT
[ENA]
¡û
>W1911776458
QXNW01000020
Gammaproteobacteria
Escherichia coli HR135 [QXNW]
71567
71492
-
Thr
TGT
[ENA]
¡û
>W1911824077
QZVZ01000091
Gammaproteobacteria
Escherichia coli 12-246M [QZVZ]
32616
32542
-
Thr
TGT
[ENA]
¡û
>W1511587651
LBBN01000034
Gammaproteobacteria
Escherichia coli K88 [LBBN]
50984
50910
-
Thr
TGT
[ENA]
¡û
>W1610965071
LVOA01000079
Gammaproteobacteria
Escherichia coli [LVOA]
16348
16274
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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