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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258147 (71 seq.)
>W1710870087
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
307665
307590
-
His
GTG
[ENA]
¡û
>W1710875799
LMOR01000002
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
318332
318257
-
His
GTG
[ENA]
¡û
>W1710876527
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
291850
291775
-
His
GTG
[ENA]
¡û
>W1710878588
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
304811
304736
-
His
GTG
[ENA]
¡û
>W1710991675
LPXW01000032
Actinomycetota
Brevibacterium ravenspurgense [LPXW]
81557
81632
+
His
GTG
[ENA]
¡û
>C171065838
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
66910
66835
-
His
GTG
-
¡û
>W141241602
CAHK01000037
Actinomycetota
Brevibacterium senegalense JC43 [CAHK]
641
566
-
His
GTG
[ENA]
¡û
>W1910181933
BJML01000008
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
30157
30082
-
His
GTG
[ENA]
¡û
>W1910182593
BJNA01000013
Actinomycetota
Microbacterium lacticum NBRC 14135 [BJNA]
53596
53671
+
His
GTG
[ENA]
¡û
>W1910442411
FWFF01000017
Actinomycetota
Brevibacterium yomogidense B Co 03.10 [FWFF]
199250
199325
+
His
GTG
[ENA]
¡û
>W1910500379
FXZF01000008
Actinomycetota
Brevibacterium sp. Mu109 [FXZF]
1118
1043
-
His
GTG
[ENA]
¡û
>W1910500670
FXZM01000011
Actinomycetota
Brevibacterium jeotgali SJ5-8 [FXZM]
103894
103819
-
His
GTG
[ENA]
¡û
>W1911140374
NOYP01000115
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
129040
128965
-
His
GTG
[ENA]
¡û
>W1911159662
NPMR01000002
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
412789
412864
+
His
GTG
[ENA]
¡û
>W1911566508
PCOW01000013
Actinomycetota
Microbacterium sp. MYb64 [PCOW]
93270
93195
-
His
GTG
[ENA]
¡û
>W1810091051
PGGU01000005
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
275555
275480
-
His
GTG
[ENA]
¡û
>W1810234136
PPEE01000004
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
184851
184776
-
His
GTG
[ENA]
¡û
>W1810475489
QAJB01000220
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
2755
2830
+
His
GTG
[ENA]
¡û
>W1810538347
QDFT01000011
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
9035
8960
-
His
GTG
[ENA]
¡û
>W1810722578
QNUW01000023
Actinomycetota
Microbacterium arborescens RCB1 [QNUW]
163830
163755
-
His
GTG
[ENA]
¡û
>W1810787046
QRDK01000004
Actinomycetota
Microbacterium sp. AG157 [QRDK]
308013
308088
+
His
GTG
[ENA]
¡û
>W1810861329
QTTU01000002
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
310052
309977
-
His
GTG
[ENA]
¡û
>SRA1016342
SRR023846.459416
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
153
78
-
His
GTG
[SRA]
>W2010095582
BJML01000008
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
30157
30082
-
His
GTG
[ENA]
¡û
>W2010268181
CABKRC020000006
Actinomycetota
Brevibacterium senegalense [CABKRC]
4106
4031
-
His
GTG
[ENA]
¡û
>W2010405775
FWFF01000017
Actinomycetota
Brevibacterium yomogidense B Co 03.10 [FWFF]
199250
199325
+
His
GTG
[ENA]
¡û
>W2010420111
FXZF01000008
Actinomycetota
Brevibacterium sp. Mu109 [FXZF]
1118
1043
-
His
GTG
[ENA]
¡û
>W2010420402
FXZM01000011
Actinomycetota
Brevibacterium jeotgali SJ5-8 [FXZM]
103894
103819
-
His
GTG
[ENA]
¡û
>W2010717313
JACHXY010000002
Actinomycetota
Microbacterium proteolyticum CECT 8356 [JACHXY]
476016
476091
+
His
GTG
[ENA]
¡û
>W2011015874
NOYP01000115
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
129040
128965
-
His
GTG
[ENA]
¡û
>W2011178792
PCOW01000013
Actinomycetota
Microbacterium sp. MYb64 [PCOW]
93270
93195
-
His
GTG
[ENA]
¡û
>W2011391782
RBZY01000031
Actinomycetota
Microbacterium enclense ZYFD042 [RBZY]
15199
15124
-
His
GTG
[ENA]
¡û
>W2011995163
VEAQ01000002
Actinomycetota
Microbacterium sp. BH-3-3-3 DE0319 [VEAQ]
434750
434825
+
His
GTG
[ENA]
¡û
>W2012000180
VEFS01000006
Actinomycetota
Microbacterium sp. BH-3-3-3 DE0130 [VEFS]
160338
160263
-
His
GTG
[ENA]
¡û
>W2012000593
VEGB01000007
Actinomycetota
Microbacterium sp. BH-3-3-3 DE0118 [VEGB]
20163
20238
+
His
GTG
[ENA]
¡û
>W2012000688
VEGD01000002
Actinomycetota
Microbacterium testaceum DE0116 [VEGD]
389168
389093
-
His
GTG
[ENA]
¡û
>W2012020726
VFOS01000001
Actinomycetota
Rarobacter faecitabidus DSM 4813 [VFOS]
1411967
1412042
+
His
GTG
[ENA]
¡û
>W2012044886
VIUB01000001
Actinomycetota
Brevibacterium jeotgali DSM 29217 [VIUB]
1037830
1037905
+
His
GTG
[ENA]
¡û
>W2012142354
VTQH01000002
Actinomycetota
Microbacterium testaceum StLB037 DE0422 [VTQH]
436134
436209
+
His
GTG
[ENA]
¡û
>W2012208766
VYRZ01000002
Actinomycetota
Microbacterium radiodurans DSM 25564 [VYRZ]
382364
382439
+
His
GTG
[ENA]
¡û
>W2012470922
WWEQ01000041
Actinomycetota
Brevibacterium sp. 5221 [WWEQ]
18746
18671
-
His
GTG
[ENA]
¡û
>W2110023335
BMFY01000001
Actinomycetota
Sediminivirga luteola CGMCC 1.12785 [BMFY]
142960
143034
+
His
GTG
[ENA]
¡û
>W2110168739
JABASY010000003
Actinomycetota
Brevibacterium yomogidense DSM 24850 [JABASY]
462262
462187
-
His
GTG
[ENA]
¡û
>W2110259936
JACSPY010000001
Actinomycetota
Brevibacterium sp. Re57 [JACSPY]
230387
230462
+
His
GTG
[ENA]
¡û
>W2110288738
JACYNU010000001
Actinomycetota
Microbacterium sp. CFBP 8801 CFBP8801 [JACYNU]
287216
287141
-
His
GTG
[ENA]
¡û
>W2110288823
JACYNW010000002
Actinomycetota
Microbacterium sp. CFBP 13617 CFBP13617 [JACYNW]
486928
487003
+
His
GTG
[ENA]
¡û
>W2110290017
JACYTT010000002
Actinomycetota
Microbacterium sp. CFBP 8794 CFBP8794 [JACYTT]
460602
460677
+
His
GTG
[ENA]
¡û
>W2110290113
JACYTV010000003
Actinomycetota
Microbacterium sp. CFBP 8790 CFBP8790 [JACYTV]
340261
340336
+
His
GTG
[ENA]
¡û
>W2110532581
JAGFBF010000004
Actinomycetota
Leucobacter tardus K 70/01 [JAGFBF]
235986
236061
+
His
GTG
[ENA]
¡û
>W2110715942
JAJAEJ010000239
Actinomycetota
Demequina sp. TTPB684 [JAJAEJ]
21093
21018
-
His
GTG
[ENA]
¡û
>W2110715992
JAJAEK010000410
Actinomycetota
Demequina sp. TMPB413 [JAJAEK]
9561
9486
-
His
GTG
[ENA]
¡û
>W1510010500
BBLU01000009
Actinomycetota
Demequina mangrovi NBRC 105856 [BBLU]
56485
56558
+
His
GTG
[ENA]
¡û
>W1510010556
BBLV01000012
Actinomycetota
Demequina gelatinilytica NBRC 109390 [BBLV]
18799
18726
-
His
GTG
[ENA]
¡û
>W1510010680
BBLY01000004
Actinomycetota
Demequina pelophila NBRC 109393 [BBLY]
487381
487306
-
His
GTG
[ENA]
¡û
>W1510010838
BBMB01000014
Actinomycetota
Demequina subtropica NBRC 109396 [BBMB]
47153
47080
-
His
GTG
[ENA]
¡û
>W1510015718
BBRG01000001
Actinomycetota
Demequina globuliformis NBRC 106266 [BBRG]
391159
391234
+
His
GTG
[ENA]
¡û
>C211405851
CP083692
Actinomycetota
Leucobacter sp. Psy1 [CP083692]
2166252
2166177
-
His
GTG
-
¡û
>C231367004
CP096184
Actinomycetota
Demequina sp. TMPB413 [CP096184]
1596859
1596934
+
His
GTG
-
¡û
>C231551906
CP113788
Actinomycetota
Brevibacterium sp. BRM-1 [CP113788]
1424635
1424560
-
His
GTG
-
¡û
>C231642791
CP121699
Actinomycetota
Microbacterium testaceum HW4 [CP121699]
351801
351726
-
His
GTG
-
¡û
>C241012022
AP027736
Actinomycetota
Demequina sediminis NBRC 112286 [AP027736]
1392128
1392203
+
His
GTG
-
¡û
>C11115206
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
3572308
3572233
-
His
GTG
[Ensembl]
¡û
>W1511528823
JYIX01000022
Actinomycetota
Microbacterium azadirachtae ARN176 [JYIX]
3199
3274
+
His
GTG
[ENA]
¡û
>W1610732433
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
307665
307590
-
His
GTG
[ENA]
¡û
>W1610738145
LMOR01000002
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
318332
318257
-
His
GTG
[ENA]
¡û
>W1610738873
LMPH01000003
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
291850
291775
-
His
GTG
[ENA]
¡û
>W1610740934
LMRB01000003
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
304811
304736
-
His
GTG
[ENA]
¡û
>W1710525086
FNJG01000002
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
416496
416571
+
His
GTG
[ENA]
¡û
>W1710525408
FNJN01000003
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
463409
463484
+
His
GTG
[ENA]
¡û
>W1710542679
FNZI01000008
Actinomycetota
Demequina mangrovi [FNZI]
56577
56650
+
His
GTG
[ENA]
¡û
>W1710600057
FTPQ01000002
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
416242
416317
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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