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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258200 (120 seq.)
>WENV180000712
FLNV01001164
[FLNV] bioreactor metagenome; Moose rumen
9667
9593
-
Pro
TGG
[ENA]
¡û
>WENV180000818
FLNV01002120
[FLNV] bioreactor metagenome; Moose rumen
2540
2465
-
Pro
TGG
[ENA]
¡û
>WENV180001200
FLNX01000313
[FLNX] bioreactor metagenome; Moose rumen
2869
2942
+
Pro
TGG
[ENA]
¡û
>WENV180001422
FLNX01001794
[FLNX] bioreactor metagenome; Moose rumen
24914
24987
+
Pro
TGG
[ENA]
¡û
>WENV180002015
FLNX01004408
[FLNX] bioreactor metagenome; Moose rumen
2788
2713
-
Pro
TGG
[ENA]
¡û
>WENV180002673
FLNY01003193
[FLNY] bioreactor metagenome; Moose rumen
2703
2777
+
Pro
TGG
[ENA]
¡û
>WENV180002856
FLNY01004061
[FLNY] bioreactor metagenome; Moose rumen
39473
39398
-
Pro
TGG
[ENA]
¡û
>WENV180003520
FLNZ01005230
[FLNZ] bioreactor metagenome; Moose rumen
15201
15128
-
Pro
TGG
[ENA]
¡û
>WENV180005870
FLRX01014801
[FLRX] metagenome; saliva
7
80
+
Pro
TGG
[ENA]
¡û
>WENV180005936
FLRX01039619
[FLRX] metagenome; saliva
85
12
-
Pro
TGG
[ENA]
¡û
>WENV180005944
FLRX01043097
[FLRX] metagenome; saliva
88
15
-
Pro
TGG
[ENA]
¡û
>WENV180006523
FLRY01102650
[FLRY] metagenome; saliva
75
2
-
Pro
TGG
[ENA]
¡û
>WENV180006966
FLRZ01045545
[FLRZ] metagenome; saliva
135
208
+
Pro
TGG
[ENA]
¡û
>WENV180010066
FLSC01267246
[FLSC] metagenome; saliva
80
153
+
Pro
TGG
[ENA]
¡û
>WENV180338278
OBLI01000152
[OBLI] pig gut metagenome; faeces
8279
8206
-
Pro
TGG
[ENA]
¡û
>WENV180338895
OBLI01001327
[OBLI] pig gut metagenome; faeces
19545
19618
+
Pro
TGG
[ENA]
¡û
>WENV180660221
OCVV010916120
[OCVV] gut metagenome; gut
6
81
+
Pro
TGG
[ENA]
¡û
>WENV180660222
OCVV010916120
[OCVV] gut metagenome; gut
6
81
+
Pro
TGG
[ENA]
¡û
>WENV180664279
OCVV011151994
[OCVV] gut metagenome; gut
96
21
-
Pro
TGG
[ENA]
¡û
>WENV180664280
OCVV011151994
[OCVV] gut metagenome; gut
96
21
-
Pro
TGG
[ENA]
¡û
>WENV180680339
OCVV012506249
[OCVV] gut metagenome; gut
213
286
+
Pro
TGG
[ENA]
¡û
>WENV180680340
OCVV012506249
[OCVV] gut metagenome; gut
213
286
+
Pro
TGG
[ENA]
¡û
>WENV180683302
OCVV012838509
[OCVV] gut metagenome; gut
6112
6039
-
Pro
TGG
[ENA]
¡û
>WENV180683304
OCVV012838509
[OCVV] gut metagenome; gut
6112
6039
-
Pro
TGG
[ENA]
¡û
>WENV180683926
OCVV012849992
[OCVV] gut metagenome; gut
15577
15504
-
Pro
TGG
[ENA]
¡û
>WENV180683930
OCVV012849992
[OCVV] gut metagenome; gut
15577
15504
-
Pro
TGG
[ENA]
¡û
>WENV180684049
OCVV012851708
[OCVV] gut metagenome; gut
8348
8273
-
Pro
TGG
[ENA]
¡û
>WENV180684050
OCVV012851708
[OCVV] gut metagenome; gut
8348
8273
-
Pro
TGG
[ENA]
¡û
>WENV180685026
OCVV012866358
[OCVV] gut metagenome; gut
13057
12982
-
Pro
TGG
[ENA]
¡û
>WENV180685028
OCVV012866358
[OCVV] gut metagenome; gut
13057
12982
-
Pro
TGG
[ENA]
¡û
>WENV180685969
OCVV012879932
[OCVV] gut metagenome; gut
85
10
-
Pro
TGG
[ENA]
¡û
>WENV180685970
OCVV012879932
[OCVV] gut metagenome; gut
85
10
-
Pro
TGG
[ENA]
¡û
>WENV180686629
OCVV012890616
[OCVV] gut metagenome; gut
1293
1368
+
Pro
TGG
[ENA]
¡û
>WENV180686630
OCVV012890616
[OCVV] gut metagenome; gut
1293
1368
+
Pro
TGG
[ENA]
¡û
>WENV181069370
ODZZ01035643
[ODZZ] human metagenome; G_DNA_Tongue dorsum
146
219
+
Pro
TGG
[ENA]
¡û
>WENV182422126
OIGV01000094
[OIGV] human gut metagenome; human gut
20969
20896
-
Pro
TGG
[ENA]
¡û
>WENV182428800
OIIB01000087
[OIIB] human gut metagenome; human gut
10266
10339
+
Pro
TGG
[ENA]
¡û
>WENV182432617
OIIP01000066
[OIIP] human gut metagenome; human gut
20969
20896
-
Pro
TGG
[ENA]
¡û
>WENV182476767
OIQI01000081
[OIQI] human gut metagenome; human gut
20969
20896
-
Pro
TGG
[ENA]
¡û
>WENV182477938
OIQM01000092
[OIQM] human gut metagenome; human gut
20985
20912
-
Pro
TGG
[ENA]
¡û
>WENV182480349
OIQX01000072
[OIQX] human gut metagenome; human gut
10265
10338
+
Pro
TGG
[ENA]
¡û
>WENV182484632
OIRN01000061
[OIRN] human gut metagenome; human gut
20927
20854
-
Pro
TGG
[ENA]
¡û
>WENV182488489
OISA01000077
[OISA] human gut metagenome; human gut
10439
10512
+
Pro
TGG
[ENA]
¡û
>WENV182492547
OISS01000059
[OISS] human gut metagenome; human gut
10266
10339
+
Pro
TGG
[ENA]
¡û
>WENV182494257
OISY01000071
[OISY] human gut metagenome; human gut
10266
10339
+
Pro
TGG
[ENA]
¡û
>WENV182497649
OITM01000083
[OITM] human gut metagenome; human gut
20927
20854
-
Pro
TGG
[ENA]
¡û
>WENV182505142
OIUX01000082
[OIUX] human gut metagenome; human gut
10266
10339
+
Pro
TGG
[ENA]
¡û
>WENV182507955
OIVP01000092
[OIVP] human gut metagenome; human gut
20969
20896
-
Pro
TGG
[ENA]
¡û
>WENV182984328
OKZM01000089
[OKZM] human gut metagenome; human gut
10266
10339
+
Pro
TGG
[ENA]
¡û
>WENV183006914
OLDG01000073
[OLDG] human gut metagenome; human gut
20969
20896
-
Pro
TGG
[ENA]
¡û
>WENV183016312
OLES01000091
[OLES] human gut metagenome; human gut
10266
10339
+
Pro
TGG
[ENA]
¡û
>WENV183020238
OLFF01000065
[OLFF] human gut metagenome; human gut
21480
21407
-
Pro
TGG
[ENA]
¡û
>WENV183222162
OLQM01000276
[OLQM] human gut metagenome; faeces
57872
57799
-
Pro
TGG
[ENA]
¡û
>WENV183643988
OQVP01001847
[OQVP] human gut metagenome; human gut
2999
3072
+
Pro
TGG
[ENA]
¡û
>WENV183656786
OQWI01000219
[OQWI] human gut metagenome; human gut
3207
3134
-
Pro
TGG
[ENA]
¡û
>WENV170775278
LXOW01026996
[LXOW] bovine gut metagenome; Cow rumen
1326
1399
+
Pro
TGG
[ENA]
¡û
>WENV170775371
LXOW01039312
[LXOW] bovine gut metagenome; Cow rumen
2051
1978
-
Pro
TGG
[ENA]
¡û
>WENV170775819
LXOW01092184
[LXOW] bovine gut metagenome; Cow rumen
8810
8883
+
Pro
TGG
[ENA]
¡û
>WENV170776386
LXOW01162641
[LXOW] bovine gut metagenome; Cow rumen
74
1
-
Pro
TGG
[ENA]
¡û
>WENV170776572
LXOW01183478
[LXOW] bovine gut metagenome; Cow rumen
1199
1124
-
Pro
TGG
[ENA]
¡û
>WENV170776604
LXOW01186181
[LXOW] bovine gut metagenome; Cow rumen
743
816
+
Pro
TGG
[ENA]
¡û
>WENV170776637
LXOW01191594
[LXOW] bovine gut metagenome; Cow rumen
3466
3539
+
Pro
TGG
[ENA]
¡û
>WENV170776761
LXOW01207219
[LXOW] bovine gut metagenome; Cow rumen
74
1
-
Pro
TGG
[ENA]
¡û
>WENV170778561
LXOW01416252
[LXOW] bovine gut metagenome; Cow rumen
2970
3045
+
Pro
TGG
[ENA]
¡û
>W141557122
JHUW01000010
Bacteroidota
Prevotella sp. MA2016 [JHUW]
53071
53146
+
Pro
TGG
[ENA]
¡û
>W141557495
JHVE01000026
Bacteroidota
Prevotella sp. P6B4 [JHVE]
26295
26370
+
Pro
TGG
[ENA]
¡û
>W141559905
JHXD01000025
Bacteroidota
Xylanibacter ruminicola Ga6B6 [JHXD]
36198
36273
+
Pro
TGG
[ENA]
¡û
>W141560061
JHXG01000013
Bacteroidota
Xylanibacter brevis P6B11 [JHXG]
92131
92206
+
Pro
TGG
[ENA]
¡û
>W141560342
JHXM01000022
Bacteroidota
Xylanibacter brevis ATCC 19188 [JHXM]
24932
25007
+
Pro
TGG
[ENA]
¡û
>W141732641
JNKF01000015
Bacteroidota
Prevotella sp. P6B1 [JNKF]
118708
118783
+
Pro
TGG
[ENA]
¡û
>W141732688
JNKG01000014
Bacteroidota
Prevotella sp. RM4 [JNKG]
9256
9181
-
Pro
TGG
[ENA]
¡û
>W141817405
JQKR01000007
Bacteroidota
Prevotella sp. FD3004 [JQKR]
155096
155023
-
Pro
TGG
[ENA]
¡û
>W1910550514
FZQZ01000001
Bacteroidota
Prevotellaceae bacterium MN60 [FZQZ]
34239
34164
-
Pro
TGG
[ENA]
¡û
>W1911154183
NPIZ01000088
Bacteroidota
Prevotella sp. P5-126 [NPIZ]
19206
19279
+
Pro
TGG
[ENA]
¡û
>W1911154225
NPJA01000050
Bacteroidota
Prevotella sp. P5-50 [NPJA]
45876
45803
-
Pro
TGG
[ENA]
¡û
>W1911154266
NPJB01000096
Bacteroidota
Prevotella sp. P4-119 [NPJB]
41333
41406
+
Pro
TGG
[ENA]
¡û
>W1911154313
NPJC01000082
Bacteroidota
Prevotella sp. P4-98 [NPJC]
45547
45474
-
Pro
TGG
[ENA]
¡û
>W1911154337
NPJD01000035
Bacteroidota
Prevotella sp. P3-120 [NPJD]
15419
15346
-
Pro
TGG
[ENA]
¡û
>W1911154375
NPJE01000040
Bacteroidota
Prevotella sp. P3-92 [NPJE]
88994
89067
+
Pro
TGG
[ENA]
¡û
>W1911154503
NPJG01000116
Bacteroidota
Prevotella sp. P5-92 [NPJG]
7279
7206
-
Pro
TGG
[ENA]
¡û
>W1911154504
NPJG01000116
Bacteroidota
Prevotella sp. P5-92 [NPJG]
7134
7060
-
Pro
TGG
[ENA]
¡û
>W1911154580
NPJI01000034
Bacteroidota
Prevotella sp. P2-180 [NPJI]
70254
70327
+
Pro
TGG
[ENA]
¡û
>W2010432137
FZQZ01000001
Bacteroidota
Prevotellaceae bacterium MN60 [FZQZ]
34239
34164
-
Pro
TGG
[ENA]
¡û
>W2011024048
NPIZ01000088
Bacteroidota
Prevotella sp. P5-126 [NPIZ]
19206
19279
+
Pro
TGG
[ENA]
¡û
>W2011024090
NPJA01000050
Bacteroidota
Prevotella sp. P5-50 [NPJA]
45876
45803
-
Pro
TGG
[ENA]
¡û
>W2011024131
NPJB01000096
Bacteroidota
Prevotella sp. P4-119 [NPJB]
41333
41406
+
Pro
TGG
[ENA]
¡û
>W2011024178
NPJC01000082
Bacteroidota
Prevotella sp. P4-98 [NPJC]
45547
45474
-
Pro
TGG
[ENA]
¡û
>W2011024202
NPJD01000035
Bacteroidota
Prevotella sp. P3-120 [NPJD]
15419
15346
-
Pro
TGG
[ENA]
¡û
>W2011024240
NPJE01000040
Bacteroidota
Prevotella sp. P3-92 [NPJE]
88994
89067
+
Pro
TGG
[ENA]
¡û
>W2011024368
NPJG01000116
Bacteroidota
Prevotella sp. P5-92 [NPJG]
7279
7206
-
Pro
TGG
[ENA]
¡û
>W2011024369
NPJG01000116
Bacteroidota
Prevotella sp. P5-92 [NPJG]
7134
7060
-
Pro
TGG
[ENA]
¡û
>W2011024445
NPJI01000034
Bacteroidota
Prevotella sp. P2-180 [NPJI]
70254
70327
+
Pro
TGG
[ENA]
¡û
>W2011484599
RQZH01000001
Bacteroidota
Prevotella sp. OH937_COT-195 [RQZH]
80854
80779
-
Pro
TGG
[ENA]
¡û
>W2011509545
RYYU01000001
Bacteroidota
Prevotella sp. KCOM 3155 [RYYU]
606523
606450
-
Pro
TGG
[ENA]
¡û
>W2110073065
BPTT01000001
Bacteroidota
Prevotella ruminicola JCM 8259 [BPTT]
1251117
1251192
+
Pro
TGG
[ENA]
¡û
>C211297628
CP071890
Bacteroidota
Prevotella ruminicola KHP1 [CP071890]
935689
935614
-
Pro
TGG
-
¡û
>C231305952
CP091786
Bacteroidota
Prevotella sp. E9-3 [CP091786]
1500901
1500974
+
Pro
TGG
-
¡û
>C231306030
CP091787
Bacteroidota
Prevotella sp. E13-17 [CP091787]
1549171
1549098
-
Pro
TGG
-
¡û
>C231306079
CP091788
Bacteroidota
Prevotella sp. E2-28 [CP091788]
2094883
2094810
-
Pro
TGG
-
¡û
>C231306098
CP091790
Bacteroidota
Prevotella sp. E13-3 [CP091790]
1259347
1259420
+
Pro
TGG
-
¡û
>C231306148
CP091791
Bacteroidota
Prevotella sp. E2-25 [CP091791]
1182520
1182593
+
Pro
TGG
-
¡û
>C231306198
CP091792
Bacteroidota
Prevotella sp. E1-9 [CP091792]
1144662
1144735
+
Pro
TGG
-
¡û
>C231306250
CP091793
Bacteroidota
Prevotella sp. E1-a [CP091793]
1144657
1144730
+
Pro
TGG
-
¡û
>C231306325
CP091794
Bacteroidota
Prevotella sp. E15-14 [CP091794]
2356878
2356805
-
Pro
TGG
-
¡û
>C231368366
CP096247
Bacteroidota
Prevotella sp. E15-22 [CP096247]
1888401
1888328
-
Pro
TGG
-
¡û
>C10110391
CP002006
Bacteroidota
Xylanibacter ruminicola 23 Bryant 23 [CP002006]
555675
555750
+
Pro
TGG
[Ensembl]
¡û
>W1710516550
FNCQ01000005
Bacteroidota
Prevotella communis BP1-148 [FNCQ]
38744
38669
-
Pro
TGG
[ENA]
¡û
>W1710524606
FNIW01000002
Bacteroidota
Prevotella communis BP1-145 [FNIW]
243961
244036
+
Pro
TGG
[ENA]
¡û
>W1710526043
FNJZ01000003
Bacteroidota
Prevotella sp. khp1 [FNJZ]
267601
267676
+
Pro
TGG
[ENA]
¡û
>W1710533562
FNRF01000004
Bacteroidota
Xylanibacter ruminicola [FNRF]
244479
244404
-
Pro
TGG
[ENA]
¡û
>W1710538012
FNUF01000001
Bacteroidota
Prevotella sp. lc2012 [FNUF]
161876
161949
+
Pro
TGG
[ENA]
¡û
>W1710538803
FNUV01000003
Bacteroidota
Xylanibacter ruminicola [FNUV]
162173
162100
-
Pro
TGG
[ENA]
¡û
>W1710540778
FNXC01000006
Bacteroidota
Xylanibacter ruminicola [FNXC]
50075
50000
-
Pro
TGG
[ENA]
¡û
>W1710554717
FOIQ01000001
Bacteroidota
Prevotella aff. ruminicola Tc2-24 [FOIQ]
166448
166521
+
Pro
TGG
[ENA]
¡û
>W1710554905
FOIV01000001
Bacteroidota
Prevotella sp. khp7 [FOIV]
503423
503350
-
Pro
TGG
[ENA]
¡û
>W1710557700
FOLF01000016
Bacteroidota
Xylanibacter ruminicola [FOLF]
9648
9723
+
Pro
TGG
[ENA]
¡û
>W1710572091
FOWK01000006
Bacteroidota
Prevotella sp. tf2-5 [FOWK]
27498
27423
-
Pro
TGG
[ENA]
¡û
>W1710579714
FPIT01000008
Bacteroidota
Prevotellaceae bacterium HUN156 [FPIT]
38708
38635
-
Pro
TGG
[ENA]
¡û
>W1710590611
FRBD01000007
Bacteroidota
Xylanibacter ruminicola [FRBD]
146784
146859
+
Pro
TGG
[ENA]
¡û
>W1710592337
FRCJ01000004
Bacteroidota
Xylanibacter ruminicola [FRCJ]
37366
37291
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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