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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25828 (65 seq.)
>C015890
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
2981901
2981810
-
Ser
TGA
[Ensembl]
¡û
>WENV181163206
OEIO01142920
[OEIO] marine metagenome; sea ice
58
149
+
Ser
TGA
[ENA]
¡û
>WENV181322433
OFKR01007460
[OFKR] marine metagenome; sea ice
568
477
-
Ser
TGA
[ENA]
¡û
>WENV181322869
OFKV01004470
[OFKV] marine metagenome; sea ice
1113
1022
-
Ser
TGA
[ENA]
¡û
>WENV181385828
OFRK01013016
[OFRK] marine metagenome; sea ice
251
342
+
Ser
TGA
[ENA]
¡û
>W141223734
BAEK01000074
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
82549
82640
+
Ser
TGA
[ENA]
¡û
>W141223751
BAEM01000022
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
171565
171474
-
Ser
TGA
[ENA]
¡û
>W141223842
BAEO01000015
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
94462
94371
-
Ser
TGA
[ENA]
¡û
>W141223900
BAEP01000008
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
72704
72795
+
Ser
TGA
[ENA]
¡û
>W141223987
BAER01000012
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
2355
2264
-
Ser
TGA
[ENA]
¡û
>W141224050
BAES01000037
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
61604
61695
+
Ser
TGA
[ENA]
¡û
>WENV182541922
OJAV01000013
[OJAV] seawater metagenome; Sea water
4375
4284
-
Ser
TGA
[ENA]
¡û
>WENV182542414
OJAY01000735
[OJAY] seawater metagenome; Sea water
4722
4631
-
Ser
TGA
[ENA]
¡û
>WENV182542607
OJAZ01000060
[OJAZ] seawater metagenome; Sea water
38462
38553
+
Ser
TGA
[ENA]
¡û
>WENV182543480
OJBB01000818
[OJBB] seawater metagenome; Sea water
4984
5075
+
Ser
TGA
[ENA]
¡û
>WENV182544182
OJBE01004620
[OJBE] seawater metagenome; Sea water
1513
1422
-
Ser
TGA
[ENA]
¡û
>WENV182546435
OJBO01033168
[OJBO] seawater metagenome; Sea water
527
618
+
Ser
TGA
[ENA]
¡û
>WENV182546800
OJBP01003913
[OJBP] seawater metagenome; Sea water
761
670
-
Ser
TGA
[ENA]
¡û
>WENV182546996
OJBR01000100
[OJBR] seawater metagenome; Sea water
4111
4020
-
Ser
TGA
[ENA]
¡û
>WENV182548787
OJBX01000143
[OJBX] seawater metagenome; Sea water
49297
49388
+
Ser
TGA
[ENA]
¡û
>WENV182549784
OJBZ01000021
[OJBZ] seawater metagenome; Sea water
62522
62613
+
Ser
TGA
[ENA]
¡û
>WENV182552484
OJCK01000411
[OJCK] seawater metagenome; Sea water
10045
10136
+
Ser
TGA
[ENA]
¡û
>WENV182555131
OJCY01003554
[OJCY] seawater metagenome; Sea water
75
166
+
Ser
TGA
[ENA]
¡û
>WENV182556933
OJDI01000030
[OJDI] seawater metagenome; Sea water
28578
28487
-
Ser
TGA
[ENA]
¡û
>WENV182562419
OJDZ01002642
[OJDZ] seawater metagenome; Sea water
4111
4020
-
Ser
TGA
[ENA]
¡û
>WENV182571016
OJFG01000050
[OJFG] seawater metagenome; Sea water
58078
57987
-
Ser
TGA
[ENA]
¡û
>WENV182571996
OJFL01000041
[OJFL] seawater metagenome; Sea water
28930
28839
-
Ser
TGA
[ENA]
¡û
>WENV182574177
OJFR01000435
[OJFR] seawater metagenome; Sea water
12113
12204
+
Ser
TGA
[ENA]
¡û
>WENV182574531
OJFS01000009
[OJFS] seawater metagenome; Sea water
50516
50607
+
Ser
TGA
[ENA]
¡û
>WENV182575932
OJFX01000593
[OJFX] seawater metagenome; Sea water
5941
5850
-
Ser
TGA
[ENA]
¡û
>WENV182578411
OJGO01000001
[OJGO] seawater metagenome; Sea water
89889
89798
-
Ser
TGA
[ENA]
¡û
>WENV182581263
OJGX01001693
[OJGX] seawater metagenome; Sea water
4743
4834
+
Ser
TGA
[ENA]
¡û
>WENV182582724
OJHC01000001
[OJHC] seawater metagenome; Sea water
331125
331216
+
Ser
TGA
[ENA]
¡û
>WENV182584313
OJHG01000001
[OJHG] seawater metagenome; Sea water
260820
260911
+
Ser
TGA
[ENA]
¡û
>WENV182591374
OJIO01000001
[OJIO] seawater metagenome; Sea water
260818
260909
+
Ser
TGA
[ENA]
¡û
>WENV182592439
OJIR01000726
[OJIR] seawater metagenome; Sea water
8995
9086
+
Ser
TGA
[ENA]
¡û
>WENV183055178
OLGX01000061
[OLGX] seawater metagenome; Sea water
66236
66327
+
Ser
TGA
[ENA]
¡û
>WENV183057461
OLHL01002612
[OLHL] seawater metagenome; Sea water
46
137
+
Ser
TGA
[ENA]
¡û
>WENV183062215
OLID01000601
[OLID] seawater metagenome; Sea water
203
112
-
Ser
TGA
[ENA]
¡û
>WENV183522325
OMOM01003329
[OMOM] seawater metagenome; Sea water
1800
1709
-
Ser
TGA
[ENA]
¡û
>WENV183615890
OOEC01001010
[OOEC] marine metagenome; sea ice
217
126
-
Ser
TGA
[ENA]
¡û
>WENV183616815
OOEE01002073
[OOEE] marine metagenome; sea ice
93
2
-
Ser
TGA
[ENA]
¡û
>WENV183617449
OOEG01000078
[OOEG] marine metagenome; sea ice
484
393
-
Ser
TGA
[ENA]
¡û
>WENV183621403
OOFU01000283
[OOFU] marine metagenome; sea ice
2662
2753
+
Ser
TGA
[ENA]
¡û
>WENV183622673
OOFW01001204
[OOFW] marine metagenome; sea ice
1007
916
-
Ser
TGA
[ENA]
¡û
>WENV183622881
OOFW01033478
[OOFW] marine metagenome; sea ice
293
384
+
Ser
TGA
[ENA]
¡û
>WENV183623151
OOFX01019327
[OOFX] marine metagenome; sea ice
288
197
-
Ser
TGA
[ENA]
¡û
>WENV183624271
OOGD01000077
[OOGD] marine metagenome; sea ice
21476
21567
+
Ser
TGA
[ENA]
¡û
>WENV183624544
OOGD01035918
[OOGD] marine metagenome; sea ice
444
353
-
Ser
TGA
[ENA]
¡û
>WENV183628264
OOGN01001892
[OOGN] marine metagenome; sea ice
372
463
+
Ser
TGA
[ENA]
¡û
>WENV183628673
OOGO01006802
[OOGO] marine metagenome; sea ice
463
372
-
Ser
TGA
[ENA]
¡û
>WENV183630864
OOGU01005387
[OOGU] marine metagenome; sea ice
1959
2050
+
Ser
TGA
[ENA]
¡û
>WENV170647325
JQIA01020751
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1551
1460
-
Ser
TGA
[ENA]
¡û
>W09103807
AAKP01000075
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
3963
3872
-
Ser
TGA
[ENA]
¡û
>W1810157948
PJCF01000007
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
14817
14726
-
Ser
TGA
[ENA]
¡û
>W2012435521
WTPY01000007
Gammaproteobacteria
Paraglaciecola sp. 20A4 [WTPY]
156617
156708
+
Ser
TGA
[ENA]
¡û
>W2110050056
BMZC01000007
Gammaproteobacteria
Paraglaciecola oceanifecundans KCTC 32337 [BMZC]
70391
70482
+
Ser
TGA
[ENA]
¡û
>W2110416200
JAEILT010000040
Gammaproteobacteria
Paraglaciecola chathamensis IB30 [JAEILT]
5190
5099
-
Ser
TGA
[ENA]
¡û
>W2110612713
JAHKQO010000001
Gammaproteobacteria
Paraglaciecola arctica A3R16 [JAHKQO]
7515
7606
+
Ser
TGA
[ENA]
¡û
>W2110612766
JAHKQP010000005
Gammaproteobacteria
Paraglaciecola agarilytica A3R12 [JAHKQP]
339421
339512
+
Ser
TGA
[ENA]
¡û
>C241114795
CP047024
Gammaproteobacteria
Paraglaciecola sp. L1A13 [CP047024]
2837550
2837459
-
Ser
TGA
-
¡û
>C241122467
CP047656
Gammaproteobacteria
Paraglaciecola mesophila GPM4 [CP047656]
953558
953467
-
Ser
TGA
-
¡û
>C11109475
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
2941463
2941372
-
Ser
TGA
[Ensembl]
¡û
>W1511348368
JRKG01000050
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
285555
285646
+
Ser
TGA
[ENA]
¡û
>C131007648
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
2410923
2411014
+
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK