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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258352 (7 seq.)
>WENV183727801
PJTP01000463
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
863
788
-
Thr
TGT
[ENA]
¢þ
>C181121027
CP025628
Betaproteobacteria
Candidatus Kinetoplastibacterium sorsogonicusi MF-08 [CP025628]
16115
16040
-
Thr
TGT
-
¡û
>C131005655
CP003733
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii [ex Strigomonas [CP003733]
187538
187463
-
Thr
TGT
[Ensembl]
¡û
>C131007222
CP003803
Betaproteobacteria
Candidatus Kinetoplastibacterium desouzaii TCC079E [CP003803]
17027
16952
-
Thr
TGT
[Ensembl]
¡û
>C131007307
CP003805
Betaproteobacteria
Candidatus Kinetoplastibacterium oncopeltii TCC290E [CP003805]
16608
16533
-
Thr
TGT
[Ensembl]
¡û
>C131007349
CP003806
Betaproteobacteria
Candidatus Kinetoplastibacterium galatii TCC219 [CP003806]
16600
16525
-
Thr
TGT
[Ensembl]
¡û
>C131007391
CP003807
Betaproteobacteria
Candidatus Kinetoplastibacterium blastocrithidii TCC012E [CP003807]
16616
16541
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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