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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258369 (74 seq.)
>W1711070772
LSGI01000055
Gammaproteobacteria
Escherichia coli [LSGI]
21530
21605
+
Asn
GTT
[ENA]
¡û
>W1711070884
LSGJ01000111
Gammaproteobacteria
Escherichia coli [LSGJ]
24033
23958
-
Asn
GTT
[ENA]
¡û
>W1711070932
LSGK01000006
Gammaproteobacteria
Escherichia coli [LSGK]
24165
24090
-
Asn
GTT
[ENA]
¡û
>W1711071044
LSGL01000074
Gammaproteobacteria
Escherichia coli [LSGL]
21540
21615
+
Asn
GTT
[ENA]
¡û
>W1711071152
LSGM01000081
Gammaproteobacteria
Escherichia coli [LSGM]
8536
8611
+
Asn
GTT
[ENA]
¡û
>W1711128655
LUTD01000037
Gammaproteobacteria
Lonsdalea populi subsp. populi [LUTD]
8368
8443
+
Asn
GTT
[ENA]
¡û
>W1711151059
LVMI01000141
Gammaproteobacteria
Escherichia coli [LVMI]
9813
9888
+
Asn
GTT
[ENA]
¡û
>W1711231670
LYAU01000136
Gammaproteobacteria
Escherichia coli [LYAU]
7363
7288
-
Asn
GTT
[ENA]
¡û
>W131070988
ANSR01000023
Gammaproteobacteria
Escherichia sp. KTE11 KTE11 [ANSR]
379078
379153
+
Asn
GTT
[ENA]
¡û
>W131199693
ASVD01000001
Gammaproteobacteria
Escherichia sp. KTE96 KTE96 [ASVD]
72235
72310
+
Asn
GTT
[ENA]
¡û
>C003681
CP000016
Gammaproteobacteria
Candidatus Blochmannia pennsylvanicus str. BPEN [CP000016]
565484
565559
+
Asn
GTT
[Ensembl]
¡û
>W141024493
AKKR01000033
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica WA-314 [AKKR]
29413
29338
-
Asn
GTT
[ENA]
¡û
>WENV180497862
OCAF01000057
[OCAF] human gut metagenome; faeces
56152
56077
-
Asn
GTT
[ENA]
¢þ
>WENV180499183
OCAH01000179
[OCAH] human gut metagenome; faeces
20375
20300
-
Asn
GTT
[ENA]
¢þ
>WENV181228835
OFEI01000002
[OFEI] insect metagenome; insect
96159
96234
+
Asn
GTT
[ENA]
¢þ
>WENV181228836
OFEI01000002
[OFEI] insect metagenome; insect
121454
121529
+
Asn
GTT
[ENA]
¢þ
>WENV181231999
OFEL01000009
[OFEL] insect metagenome; insect
24674
24749
+
Asn
GTT
[ENA]
¢þ
>WENV181232036
OFEL01000278
[OFEL] insect metagenome; insect
6651
6726
+
Asn
GTT
[ENA]
¢þ
>WENV181722913
OGPW01000634
[OGPW] human gut metagenome; faeces
20333
20258
-
Asn
GTT
[ENA]
¢þ
>C191219758
LR217713
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCicurvipes [LR217713]
274842
274917
+
Asn
GTT
-
¡û
>C191219971
LR217737
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipiceae [LR217737]
277690
277765
+
Asn
GTT
-
¡û
>W141551435
JHNY01000223
Gammaproteobacteria
Escherichia coli O28ac:NM str. 02-3404 [JHNY]
4965
5040
+
Asn
GTT
[ENA]
¡û
>W141745850
JNQP01000022
Gammaproteobacteria
Escherichia coli 2-316-03_S3_C1 [JNQP]
11222
11147
-
Asn
GTT
[ENA]
¡û
>W141781431
JOQD01000046
Gammaproteobacteria
Escherichia coli 3-475-03_S3_C1 [JOQD]
8485
8410
-
Asn
GTT
[ENA]
¡û
>W1910373569
FUHL01000001
Gammaproteobacteria
Serratia symbiotica SCifornacula [FUHL]
823007
822934
-
Asn
GTT
[ENA]
¡û
>W1910643491
LUSP01000092
Gammaproteobacteria
Lonsdalea quercina CFCC 11059 [LUSP]
282
207
-
Asn
GTT
[ENA]
¡û
>W1910643603
LUSR01000083
Gammaproteobacteria
Lonsdalea populi CFCC 12786 [LUSR]
7611
7686
+
Asn
GTT
[ENA]
¡û
>W1910643649
LUSS01000127
Gammaproteobacteria
Lonsdalea populi CFCC 12252 [LUSS]
477
402
-
Asn
GTT
[ENA]
¡û
>W1910643712
LUST01000085
Gammaproteobacteria
Lonsdalea populi CFCC 13912 [LUST]
7899
7974
+
Asn
GTT
[ENA]
¡û
>W1910643887
LUSW01000060
Gammaproteobacteria
Lonsdalea populi CFCC 12721 [LUSW]
281
206
-
Asn
GTT
[ENA]
¡û
>W1910643950
LUSX01000050
Gammaproteobacteria
Lonsdalea populi CFCC 11265 [LUSX]
1623
1548
-
Asn
GTT
[ENA]
¡û
>W1910643989
LUSY01000036
Gammaproteobacteria
Lonsdalea populi CFCC 11264 [LUSY]
29491
29416
-
Asn
GTT
[ENA]
¡û
>W1910644049
LUSZ01000039
Gammaproteobacteria
Lonsdalea populi CFCC 11263 [LUSZ]
7608
7683
+
Asn
GTT
[ENA]
¡û
>W1910644272
LUTE01000044
Gammaproteobacteria
Lonsdalea populi CFCC 11196 [LUTE]
22524
22449
-
Asn
GTT
[ENA]
¡û
>W1910644331
LUTF01000046
Gammaproteobacteria
Lonsdalea populi CFCC 11199 [LUTF]
8368
8443
+
Asn
GTT
[ENA]
¡û
>W1910644388
LUTG01000165
Gammaproteobacteria
Lonsdalea populi CFCC 13872 [LUTG]
2736
2811
+
Asn
GTT
[ENA]
¡û
>W1910644446
LUTH01000099
Gammaproteobacteria
Lonsdalea populi CFCC 13800 [LUTH]
8329
8404
+
Asn
GTT
[ENA]
¡û
>W1910782100
MPIA01000001
Gammaproteobacteria
Escherichia marmotae 12_Esco_HA-NL [MPIA]
166002
165927
-
Asn
GTT
[ENA]
¡û
>W1910802750
MTAH01000013
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum Q40 [MTAH]
1446
1371
-
Asn
GTT
[ENA]
¡û
>W1910803040
MTAL01000024
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum Q115 [MTAL]
2405
2330
-
Asn
GTT
[ENA]
¡û
>W1910803237
MTAO01000024
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum Q142 [MTAO]
54005
54080
+
Asn
GTT
[ENA]
¡û
>W1910803300
MTAP01000023
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum Q166 [MTAP]
2405
2330
-
Asn
GTT
[ENA]
¡û
>W1910803411
MTAR01000011
Gammaproteobacteria
Pectobacterium odoriferum subsp. odoriferum T5 [MTAR]
117329
117404
+
Asn
GTT
[ENA]
¡û
>W1910951874
NJNA01000041
Gammaproteobacteria
Escherichia coli MOD1-EC268 [NJNA]
16743
16818
+
Asn
GTT
[ENA]
¡û
>W1910951953
NJNB01000058
Gammaproteobacteria
Escherichia coli MOD1-EC267 [NJNB]
16743
16818
+
Asn
GTT
[ENA]
¡û
>W1910952106
NJND01000040
Gammaproteobacteria
Escherichia coli MOD1-EC163 [NJND]
16743
16818
+
Asn
GTT
[ENA]
¡û
>W1911017701
NLMR01000057
Gammaproteobacteria
Escherichia coli MOD1-EC5526 [NLMR]
7014
7089
+
Asn
GTT
[ENA]
¡û
>W1911024998
NLRG01000009
Gammaproteobacteria
Escherichia coli MOD1-EC5185 [NLRG]
1822
1897
+
Asn
GTT
[ENA]
¡û
>W1911025162
NLRI01000034
Gammaproteobacteria
Escherichia coli MOD1-EC5181 [NLRI]
38197
38122
-
Asn
GTT
[ENA]
¡û
>W1911044312
NMBJ01000031
Gammaproteobacteria
Escherichia coli MOD1-EC6180 [NMBJ]
49839
49764
-
Asn
GTT
[ENA]
¡û
>W1911246241
NSKP01000077
Gammaproteobacteria
Escherichia coli 19 [NSKP]
2413
2488
+
Asn
GTT
[ENA]
¡û
>W1911389271
NWAN01000228
Gammaproteobacteria
Escherichia coli F339 [NWAN]
272
347
+
Asn
GTT
[ENA]
¡û
>W1810055202
PDFW01000688
Gammaproteobacteria
Vibrio vulnificus R02 [PDFW]
282
357
+
Asn
GTT
[ENA]
¡û
>W1810058825
PDKU01000001
Gammaproteobacteria
Candidatus Pantoea edessiphila SoEL [PDKU]
138398
138325
-
Asn
GTT
[ENA]
¡û
>W1810309294
PTSU01000026
Gammaproteobacteria
Escherichia fergusonii MOD1-EC5837 [PTSU]
33690
33765
+
Asn
GTT
[ENA]
¡û
>W1810309482
PTSX02000025
Gammaproteobacteria
Escherichia sp. MOD1-EC5451 [PTSX]
45495
45420
-
Asn
GTT
[ENA]
¡û
>W1810402142
PYHG01000009
Gammaproteobacteria
Klebsiella aerogenes AUH-KAM2 [PYHG]
18312
18387
+
Asn
GTT
[ENA]
¡û
>W1810746669
QOXB01000028
Gammaproteobacteria
Escherichia coli MOD1-ECOR16 [QOXB]
51115
51190
+
Asn
GTT
[ENA]
¡û
>C151001747
AP014521
Gammaproteobacteria
Candidatus Tachikawaea gelatinosa UwTKB [AP014521]
183197
183122
-
Asn
GTT
[Ensembl]
¡û
>C151063684
CP010048
Gammaproteobacteria
Blochmannia endosymbiont of Polyrhachis [Hedomyrma] turneri 675 [CP010048]
530615
530688
+
Asn
GTT
[Ensembl]
¡û
>C11104482
CP002189
Gammaproteobacteria
Candidatus Blochmannia vafer str. BVAF [CP002189]
516893
516968
+
Asn
GTT
[Ensembl]
¡û
>W1510669182
CWJL01000004
Gammaproteobacteria
Yersinia pekkanenii type strain: CIP110230 [CWJL]
160075
160000
-
Asn
GTT
[ENA]
¡û
>W1510669183
CWJL01000004
Gammaproteobacteria
Yersinia pekkanenii type strain: CIP110230 [CWJL]
142607
142532
-
Asn
GTT
[ENA]
¡û
>W1510669184
CWJL01000004
Gammaproteobacteria
Yersinia pekkanenii type strain: CIP110230 [CWJL]
130629
130554
-
Asn
GTT
[ENA]
¡û
>W1510729749
CYBB01000042
Gammaproteobacteria
Escherichia coli 703258_aEPEC [CYBB]
7680
7605
-
Asn
GTT
[ENA]
¡û
>W1510737021
CYEX01000044
Gammaproteobacteria
Escherichia coli 402842 [CYEX]
7673
7598
-
Asn
GTT
[ENA]
¡û
>W1511040759
JHRZ01000046
Gammaproteobacteria
Escherichia coli 200146 [JHRZ]
8052
7977
-
Asn
GTT
[ENA]
¡û
>W1511429384
JUDL01000036
Gammaproteobacteria
Escherichia coli CVM N33633PS [JUDL]
6128
6053
-
Asn
GTT
[ENA]
¡û
>C161107315
LN890285
Gammaproteobacteria
Buchnera aphidicola BTs [LN890285]
398463
398389
-
Asn
GTT
-
¡û
>C161107334
LN890288
Gammaproteobacteria
Serratia symbiotica STs [LN890288]
20765
20840
+
Asn
GTT
-
¡û
>C161108680
LN999833
Gammaproteobacteria
Candidatus Doolittlea endobia [LN999833]
60010
59935
-
Asn
GTT
[Ensembl]
¡û
>C131009541
CP003903
Gammaproteobacteria
Candidatus Blochmannia chromaiodes str. 640 [CP003903]
565159
565234
+
Asn
GTT
[Ensembl]
¡û
>W1610961599
LVMI01000141
Gammaproteobacteria
Escherichia coli [LVMI]
9813
9888
+
Asn
GTT
[ENA]
¡û
>W1710551473
FOGC01000005
Gammaproteobacteria
Rosenbergiella nectarea [FOGC]
54744
54669
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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