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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258376 (16 seq.)
>WENV180001056
FLNW01003706
[FLNW] bioreactor metagenome; Moose rumen
6142
6215
+
Met
CAT
[ENA]
¡û
>WENV180682781
OCVV012830664
[OCVV] gut metagenome; gut
12340
12267
-
Met
CAT
[ENA]
¡û
>WENV180682782
OCVV012830664
[OCVV] gut metagenome; gut
12340
12267
-
Met
CAT
[ENA]
¡û
>W1911243805
NSGW01000001
Fibrobacterota
Fibrobacter sp. UWS1 [NSGW]
1952274
1952348
+
Met
CAT
[ENA]
¡û
>W1911243913
NSGY01000001
Fibrobacterota
Fibrobacter sp. NR9 [NSGY]
2428493
2428567
+
Met
CAT
[ENA]
¡û
>W1810089729
PGEX01000001
Fibrobacterota
Hallerella succinigenes UWS3 [PGEX]
1424331
1424404
+
Met
CAT
[ENA]
¡û
>W1810365130
PVTU01000016
Fibrobacterota
Fibrobacter sp. UWRM [PVTU]
62367
62293
-
Met
CAT
[ENA]
¡û
>W1810400609
PYGG01000003
Fibrobacterota
Fibrobacter sp. UWS2 [PYGG]
98679
98752
+
Met
CAT
[ENA]
¡û
>W1810597257
QGHD01000011
Fibrobacterota
Hallerella porci UWS4 [QGHD]
4932
5006
+
Met
CAT
[ENA]
¡û
>W2010331399
CACXDW010000061
Fibrobacterota
Fibrobacter succinogenes [CACXDW]
10194
10120
-
Met
CAT
[ENA]
¡û
>W2010342421
CADAVW010000021
Fibrobacterota
Fibrobacter succinogenes [CADAVW]
10326
10399
+
Met
CAT
[ENA]
¡û
>W2010342792
CADAYQ010000001
Fibrobacterota
Fibrobacter succinogenes [CADAYQ]
95516
95589
+
Met
CAT
[ENA]
¡û
>W2011069164
NSGW01000001
Fibrobacterota
Fibrobacter sp. UWS1 [NSGW]
1952274
1952348
+
Met
CAT
[ENA]
¡û
>W2011069272
NSGY01000001
Fibrobacterota
Fibrobacter sp. NR9 [NSGY]
2428493
2428567
+
Met
CAT
[ENA]
¡û
>W1710590292
FRAW01000018
Fibrobacterota
Fibrobacter intestinalis UWOS [FRAW]
6326
6400
+
Met
CAT
[ENA]
¡û
>W1710600810
FUWU01000027
Fibrobacterota
Fibrobacter intestinalis [FUWU]
18943
18869
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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