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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258481 (126 seq.)
>W1710862446
LMEJ01000014
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
406789
406864
+
Glu
TTC
[ENA]
¡û
>W1710863942
LMFM01000018
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
406791
406866
+
Glu
TTC
[ENA]
¡û
>W1710867175
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
489594
489519
-
Glu
TTC
[ENA]
¡û
>W1710867275
LMID01000001
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
911618
911543
-
Glu
TTC
[ENA]
¡û
>W1710907343
LNOS01000042
Alphaproteobacteria
Sphingomonas sp. WG [LNOS]
4778
4853
+
Glu
CTC
[ENA]
¡û
>W1710912720
LNRV01000029
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
13727
13652
-
Glu
TTC
[ENA]
¡û
>W1710912763
LNRW01000028
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
43902
43977
+
Glu
TTC
[ENA]
¡û
>W1710912808
LNRX01000029
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
13746
13671
-
Glu
TTC
[ENA]
¡û
>W1710912925
LNSA01000006
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
14905
14830
-
Glu
TTC
[ENA]
¡û
>W1710913004
LNSC01000010
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
26352
26277
-
Glu
TTC
[ENA]
¡û
>W1710913135
LNSF01000002
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
466446
466371
-
Glu
TTC
[ENA]
¡û
>W1710913327
LNSJ01000009
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
43788
43713
-
Glu
TTC
[ENA]
¡û
>W1711073039
LSIE01000057
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
5311
5386
+
Glu
TTC
[ENA]
¡û
>W1711603444
MOLY01000030
Alphaproteobacteria
Sphingomonas montana W16RD [MOLY]
7086
7161
+
Glu
TTC
[ENA]
¡û
>C171075861
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
99765
99840
+
Glu
TTC
-
¡û
>C171117084
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
276142
276067
-
Glu
TTC
-
¡û
>W131098365
AORL01000019
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
130926
131001
+
Glu
TTC
[ENA]
¡û
>W131196604
ASTM01000152
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
3167
3092
-
Glu
TTC
[ENA]
¡û
>C024971
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
5207447
5207522
+
Glu
TTC
[Ensembl]
¡û
>WENV180020085
FTCV01001616
[FTCV] metagenome; soil
2850
2775
-
Glu
TTC
[ENA]
¡û
>WENV180020380
FTCZ01002410
[FTCZ] metagenome; soil
2945
3020
+
Glu
TTC
[ENA]
¡û
>WENV180020612
FTCZ01007279
[FTCZ] metagenome; soil
6549
6474
-
Glu
TTC
[ENA]
¡û
>WENV180026354
FTIT01002117
[FTIT] metagenome; soil
6147
6222
+
Glu
TTC
[ENA]
¡û
>WENV180588485
OCOP01068486
[OCOP] marine metagenome; water
253
178
-
Glu
TTC
[ENA]
¡û
>WENV180690292
OCZS010002196
[OCZS] soil metagenome; soil
4131
4056
-
Glu
TTC
[ENA]
¡û
>W141223059
BACX01000741
Alphaproteobacteria
Sphingomonas-like bacterium B12 [BACX]
3607
3682
+
Glu
TTC
[ENA]
¡û
>WENV182559478
OJDP01016263
[OJDP] seawater metagenome; Sea water
562
487
-
Glu
CTC
[ENA]
¡û
>WENV182586625
OJHK01001952
[OJHK] seawater metagenome; Sea water
4490
4415
-
Glu
CTC
[ENA]
¡û
>WENV183748651
PPFU01064686
[PPFU] hypolithon metagenome; Antarctic Hypolithon
76
1
-
Glu
TTC
[ENA]
¡û
>WENV183749776
PPFU01212176
[PPFU] hypolithon metagenome; Antarctic Hypolithon
139
64
-
Glu
TTC
[ENA]
¡û
>WENV170713815
LNFM01043103
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2785
2858
+
Glu
CTC
[ENA]
¡û
>WENV170974376
MTKY01059149
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1761
1836
+
Glu
TTC
[ENA]
¡û
>C181081618
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
3274646
3274571
-
Glu
TTC
-
¡û
>C191004240
AP018711
Alphaproteobacteria
Sphingosinicella microcystinivorans B9 [AP018711]
2062295
2062370
+
Glu
TTC
-
¡û
>C191144149
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
3630797
3630872
+
Glu
TTC
-
¡û
>W141564489
JIAU01000008
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
56577
56502
-
Glu
TTC
[ENA]
¡û
>W09106507
AAVK01000003
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
66010
66085
+
Glu
TTC
[ENA]
¡û
>W141713953
JMUB01000041
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [JMUB]
32038
32113
+
Glu
TTC
[ENA]
¡û
>W141819211
JQMC01000060
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
6678
6753
+
Glu
TTC
[ENA]
¡û
>W1911391058
NWBU01000009
Alphaproteobacteria
Sphingomonas sp. FW-11 [NWBU]
233340
233265
-
Glu
TTC
[ENA]
¡û
>W1911391067
NWBU01000010
Alphaproteobacteria
Sphingomonas sp. FW-11 [NWBU]
642928
643003
+
Glu
CTC
[ENA]
¡û
>W1911398095
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
764399
764474
+
Glu
CTC
[ENA]
¡û
>W1911411161
NWUF01000020
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
26440
26365
-
Glu
TTC
[ENA]
¡û
>W1911687932
QLJC01000006
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env8_1116 [QLJC]
205865
205940
+
Glu
CTC
[ENA]
¡û
>W1911687933
QLJC01000006
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env8_1116 [QLJC]
56082
56007
-
Glu
CTC
[ENA]
¡û
>W1911688062
QLJF01000007
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env2_1116 [QLJF]
205936
206011
+
Glu
CTC
[ENA]
¡û
>W1911688063
QLJF01000007
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env2_1116 [QLJF]
56153
56078
-
Glu
CTC
[ENA]
¡û
>W1911688211
QLJI01000007
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt4_0816 [QLJI]
99184
99259
+
Glu
CTC
[ENA]
¡û
>W1911688274
QLJJ01000020
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt2_0716 [QLJJ]
32
107
+
Glu
CTC
[ENA]
¡û
>W1911688346
QLJL01000004
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt1_0416 [QLJL]
162611
162686
+
Glu
CTC
[ENA]
¡û
>W1911718469
QQWJ01000007
Alphaproteobacteria
Sphingomonas koreensis KCTC 2883 [QQWJ]
202852
202927
+
Glu
CTC
[ENA]
¡û
>W1911718626
QQWM01000021
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env15_0417 [QQWM]
56059
55984
-
Glu
CTC
[ENA]
¡û
>W1911718800
QQWQ01000011
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env9_0217 [QQWQ]
32
107
+
Glu
CTC
[ENA]
¡û
>W1911718896
QQWS01000013
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt9_0208 [QQWS]
56160
56085
-
Glu
CTC
[ENA]
¡û
>W1911719276
QQXA01000010
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt14_0612 [QQXA]
145008
144933
-
Glu
CTC
[ENA]
¡û
>W1911719375
QQXC01000027
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt11_0411 [QQXC]
56083
56008
-
Glu
CTC
[ENA]
¡û
>W1911719413
QQXD01000021
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt12_0112 [QQXD]
51104
51179
+
Glu
CTC
[ENA]
¡û
>W1911719465
QQXE01000027
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env5_1116 [QQXE]
43
118
+
Glu
CTC
[ENA]
¡û
>W1911719941
QQXS01000016
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env54_1217 [QQXS]
56158
56083
-
Glu
CTC
[ENA]
¡û
>W1911719965
QQXT01000004
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env57_1217 [QQXT]
298207
298132
-
Glu
CTC
[ENA]
¡û
>W1911720395
QQYC01000014
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env45_1017 [QQYC]
32
107
+
Glu
CTC
[ENA]
¡û
>W1911720804
QQYL01000022
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env37_0717 [QQYL]
38
113
+
Glu
CTC
[ENA]
¡û
>W1911720847
QQYM01000016
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env35_0717 [QQYM]
51109
51184
+
Glu
CTC
[ENA]
¡û
>W1911720928
QQYO01000009
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env33_0717 [QQYO]
86442
86367
-
Glu
CTC
[ENA]
¡û
>W1911721072
QQYR01000011
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env30_0717 [QQYR]
56068
55993
-
Glu
CTC
[ENA]
¡û
>W1911765782
QXDC01000002
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
230596
230521
-
Glu
CTC
[ENA]
¡û
>W1911783381
QXTF01000002
Alphaproteobacteria
Sphingomonas sp. DAC4 [QXTF]
237758
237683
-
Glu
CTC
[ENA]
¡û
>W1810390297
PXYI01000006
Alphaproteobacteria
Sphingomonas deserti GL-C-18 [PXYI]
304516
304591
+
Glu
TTC
[ENA]
¡û
>W1810538556
QDFY01000010
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
82273
82198
-
Glu
TTC
[ENA]
¡û
>W1810579381
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
1022144
1022219
+
Glu
TTC
[ENA]
¡û
>W1810586261
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
1959778
1959853
+
Glu
TTC
[ENA]
¡û
>W1810724723
QOBC01000008
Alphaproteobacteria
Sphingomonas paucimobilis AIMST S2 [QOBC]
178280
178355
+
Glu
CTC
[ENA]
¡û
>SRA1015243
SRR023845.516779
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
205
279
+
Glu
TTC
[SRA]
>W2010474876
JAAILI010000057
Alphaproteobacteria
Sphingomonas sp. S2M10 [JAAILI]
44761
44686
-
Glu
CTC
[ENA]
¡û
>W2010523144
JAANPA010000001
Alphaproteobacteria
Sphingosinicella sp. YJ22 [JAANPA]
150746
150671
-
Glu
CTC
[ENA]
¡û
>W2010526904
JAANYY010000003
Alphaproteobacteria
Sphingopyxis sp. Z10-6 [JAANYY]
735285
735360
+
Glu
TTC
[ENA]
¡û
>W2010559767
JAASQK010000003
Alphaproteobacteria
Sphingomonas oligoaromativorans DSM 102246 [JAASQK]
419055
419130
+
Glu
TTC
[ENA]
¡û
>W2010559840
JAASQM010000001
Alphaproteobacteria
Sphingomonas naasensis DSM 100060 [JAASQM]
305981
306056
+
Glu
CTC
[ENA]
¡û
>W2010669955
JACCAR010000001
Alphaproteobacteria
Sphingomonas sp. R3G8D [JACCAR]
1930067
1930142
+
Glu
CTC
[ENA]
¡û
>W2010682068
JACEIB010000001
Alphaproteobacteria
Sphingomonas sp. CGMCC 1.13654 [JACEIB]
137427
137502
+
Glu
TTC
[ENA]
¡û
>W2010700692
JACHGC010000002
Alphaproteobacteria
Pacificimonas flava DSM 107612 [JACHGC]
2622
2547
-
Glu
CTC
[ENA]
¡û
>W2010709015
JACHLW010000001
Alphaproteobacteria
Sphingomonas sp. R1S3D [JACHLW]
864200
864275
+
Glu
CTC
[ENA]
¡û
>W2010711935
JACHNZ010000011
Alphaproteobacteria
Sphingosinicella soli DSM 17328 [JACHNZ]
66690
66615
-
Glu
TTC
[ENA]
¡û
>W2010719931
JACHZX010000002
Alphaproteobacteria
Sphingomonas sp. BK345 [JACHZX]
55369
55294
-
Glu
CTC
[ENA]
¡û
>W2010721325
JACIAY010000016
Alphaproteobacteria
Sphingomonas sp. BK580 [JACIAY]
12169
12094
-
Glu
CTC
[ENA]
¡û
>W2010726288
JACIEV010000006
Alphaproteobacteria
Sphingomonas jinjuensis YC6723 [JACIEV]
175181
175106
-
Glu
CTC
[ENA]
¡û
>W2010732198
JACIJR010000007
Alphaproteobacteria
Sphingomonas prati DSM 103336 [JACIJR]
104562
104637
+
Glu
TTC
[ENA]
¡û
>W2011133596
NWBU01000009
Alphaproteobacteria
Sphingomonas sp. FW-11 [NWBU]
233340
233265
-
Glu
TTC
[ENA]
¡û
>W2011137863
NWUF01000020
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
26440
26365
-
Glu
TTC
[ENA]
¡û
>W2011388528
RBWX01000007
Alphaproteobacteria
Sphingosinicella microcystinivorans DSM 19791 [RBWX]
893021
893096
+
Glu
TTC
[ENA]
¡û
>W2011493726
RWJF01000001
Alphaproteobacteria
Sphingomonas sp. HMF7854 [RWJF]
3090778
3090853
+
Glu
TTC
[ENA]
¡û
>W2011522124
SACN01000001
Alphaproteobacteria
Sphingomonas sp. CCP-7 [SACN]
2237212
2237287
+
Glu
TTC
[ENA]
¡û
>W2011530273
SBFF01000004
Alphaproteobacteria
Sphingosinicella sp. CPCC 101087 [SBFF]
55333
55258
-
Glu
TTC
[ENA]
¡û
>W2011667284
SPDV01000010
Alphaproteobacteria
Sphingomonas sp. 17J27-24 [SPDV]
19616
19541
-
Glu
TTC
[ENA]
¡û
>W2012097958
VNIM01000167
Alphaproteobacteria
Sphingomonas sp. R4DWN [VNIM]
38
113
+
Glu
TTC
[ENA]
¡û
>W2012141209
VTOU01000001
Alphaproteobacteria
Sphingomonas sp. ZX [VTOU]
68829
68754
-
Glu
TTC
[ENA]
¡û
>W2012425983
WRPJ01000005
Alphaproteobacteria
Sphingomonas prati W18RD [WRPJ]
241215
241140
-
Glu
TTC
[ENA]
¡û
>W2012428082
WSFN01000012
Alphaproteobacteria
Sphingomonas sp. MAH-6 [WSFN]
137427
137502
+
Glu
TTC
[ENA]
¡û
>W2110027978
BMJP01000005
Alphaproteobacteria
Sphingomonas prati CGMCC 1.15645 [BMJP]
104594
104669
+
Glu
TTC
[ENA]
¡û
>W2110300589
JADBDT010000001
Alphaproteobacteria
Sphingopyxis sp. OAS728 [JADBDT]
3088787
3088712
-
Glu
TTC
[ENA]
¡û
>W2110304886
JADCUC010000004
Alphaproteobacteria
Sandaracinobacteroides hominis SZY PN-1 [JADCUC]
103113
103038
-
Glu
TTC
[ENA]
¡û
>W2110330746
JADKYM010000010
Alphaproteobacteria
Sphingopyxis solisilvae R366 [JADKYM]
31146
31071
-
Glu
TTC
[ENA]
¡û
>W2110493893
JAFFJW010000001
Alphaproteobacteria
Sphingomonas sp. SYSU D00722 [JAFFJW]
90916
90991
+
Glu
CTC
[ENA]
¡û
>W2110613835
JAHKRT010000003
Alphaproteobacteria
Sphingomonas sp. XMGL2 [JAHKRT]
478621
478696
+
Glu
TTC
[ENA]
¡û
>C201182054
CP046535
Alphaproteobacteria
Sphingomonas sp. LMO-1 [CP046535]
3878968
3879043
+
Glu
TTC
-
¡û
>C211121958
CP059319
Alphaproteobacteria
Sphingomonas wittichii MPO218 [CP059319]
1712285
1712210
-
Glu
TTC
-
¡û
>C211138712
CP060780
Alphaproteobacteria
Sphingomonas daechungensis KACC 18115 [CP060780]
1583451
1583526
+
Glu
TTC
-
¡û
>C211138748
CP060782
Alphaproteobacteria
Sphingomonas sediminicola KACC 15039 [CP060782]
247758
247833
+
Glu
TTC
-
¡û
>C231032182
CP022707
Alphaproteobacteria
Novosphingobium sp. 9 [CP022707, CP022708]
2435403
2435478
+
Glu
TTC
-
¡û
>C231166270
CP080430
Alphaproteobacteria
Sphingomonas sp. DS-9 [CP080430]
996116
996041
-
Glu
TTC
-
¡û
>C231565252
CP115174
Alphaproteobacteria
Sphingomonas sp. PAMB00755 [CP115174]
246289
246364
+
Glu
TTC
-
¡û
>C231572095
CP116005
Alphaproteobacteria
Sphingosinicella microcystinivorans DMF-3 [CP116005]
3927406
3927331
-
Glu
TTC
-
¡û
>C231595903
CP117411
Alphaproteobacteria
Sphingomonas naphthae KACC 18716 [CP117411]
165312
165237
-
Glu
TTC
-
¡û
>C241133179
CP049107
Alphaproteobacteria
Rhizorhabdus phycosphaerae MK52 [CP049107]
764587
764512
-
Glu
TTC
-
¡û
>W2110784443
WMBU01000042
Alphaproteobacteria
Rhizorhabdus histidinilytica BT1 5.2 [WMBU]
36774
36849
+
Glu
TTC
[ENA]
¡û
>W1511581117
LARW01000090
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
29939
29864
-
Glu
TTC
[ENA]
¡û
>W1511633052
LDES01000056
Alphaproteobacteria
Sphingomonas sp. Y57 [LDES]
63654
63579
-
Glu
TTC
[ENA]
¡û
>WENV056540
AACY023259057
Marine microbial communities from Global Ocean Sampling (GOS)
22
97
+
Glu
TTC
[ENA]
>W121034451
AHKO01000714
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
2397
2322
-
Glu
TTC
[ENA]
¡û
>W1610724792
LMEJ01000014
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
406789
406864
+
Glu
TTC
[ENA]
¡û
>W1610726288
LMFM01000018
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
406791
406866
+
Glu
TTC
[ENA]
¡û
>W1610729521
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
489594
489519
-
Glu
TTC
[ENA]
¡û
>W1610729621
LMID01000001
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
911618
911543
-
Glu
TTC
[ENA]
¡û
>W1710512362
FMZJ01000001
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
16355
16430
+
Glu
TTC
[ENA]
¡û
>W1710602724
FUYM01000001
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
119130
119205
+
Glu
TTC
[ENA]
¡û
>W1710743486
LGVA01000046
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
26365
26290
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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