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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258485 (56 seq.)
>W1710862414
LMEJ01000001
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
66825
66900
+
Thr
TGT
[ENA]
¡û
>W1710863917
LMFM01000011
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
67029
67104
+
Thr
TGT
[ENA]
¡û
>W1710867177
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
136340
136265
-
Thr
TGT
[ENA]
¡û
>W1710867292
LMID01000013
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
67413
67488
+
Thr
TGT
[ENA]
¡û
>W1710878191
LMQT01000002
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
87754
87829
+
Thr
TGT
[ENA]
¡û
>W1710878335
LMQW01000022
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
8796
8871
+
Thr
TGT
[ENA]
¡û
>W1710878444
LMQY01000065
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
8760
8835
+
Thr
TGT
[ENA]
¡û
>W1710882976
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
1046122
1046197
+
Thr
TGT
[ENA]
¡û
>W1710912994
LNSC01000001
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
14018
14093
+
Thr
TGT
[ENA]
¡û
>W131182194
ARQE01000004
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
8198
8273
+
Thr
TGT
[ENA]
¡û
>WENV180021497
FTEM01000731
[FTEM] metagenome; soil
1246
1171
-
Thr
TGT
[ENA]
¡û
>WENV180021910
FTFE01000448
[FTFE] metagenome; soil
1299
1225
-
Thr
TGT
[ENA]
¡û
>WENV180026795
FTIU01156826
[FTIU] metagenome; soil
146
71
-
Thr
TGT
[ENA]
¡û
>WENV180285060
OBID01209742
[OBID] metagenome; sludge
38
113
+
Thr
TGT
[ENA]
¡û
>WENV180304553
OBJI01121058
[OBJI] soil metagenome; soil
186
111
-
Thr
TGT
[ENA]
¡û
>WENV180694782
OCZS012670885
[OCZS] soil metagenome; soil
70
145
+
Thr
TGT
[ENA]
¡û
>WENV181311915
OFJB01022245
[OFJB] sludge metagenome; sludge
419
344
-
Thr
TGT
[ENA]
¡û
>WENV181367175
OFPW01000498
[OFPW] freshwater metagenome; Freshwater Lake
500
575
+
Thr
TGT
[ENA]
¡û
>W141148472
AWXZ01000007
Alphaproteobacteria
Lutibaculum baratangense AMV1 [AWXZ]
3746
3821
+
Thr
TGT
[ENA]
¡û
>WENV170553781
CXWK01031067
[CXWK] wastewater metagenome; activated sludge
1396
1321
-
Thr
TGT
[ENA]
¡û
>WENV170650183
JRYD01019111
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
442
367
-
Thr
TGT
[ENA]
¡û
>C181081627
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
2184425
2184350
-
Thr
TGT
-
¡û
>C191007614
AP019389
Alphaproteobacteria
Qipengyuania flava KJ5 [AP019389]
2429205
2429280
+
Thr
TGT
-
¡û
>W1911398102
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1913897
1913972
+
Thr
TGT
[ENA]
¡û
>W1911411158
NWUF01000016
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
35234
35309
+
Thr
TGT
[ENA]
¡û
>C151086716
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
1324727
1324802
+
Thr
TGT
[Ensembl]
¡û
>W2010725762
JACIEK010000008
Alphaproteobacteria
Aureimonas pseudogalii DSM 102238 [JACIEK]
187749
187674
-
Thr
TGT
[ENA]
¡û
>W2010731852
JACIJJ010000006
Alphaproteobacteria
Sphingomonas yantingensis DSM 27244 [JACIJJ]
100061
99986
-
Thr
TGT
[ENA]
¡û
>WENV031068
AACY021337013
Marine microbial communities from Global Ocean Sampling (GOS)
444
367
-
Thr
TGT
[ENA]
>W2011134910
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1913897
1913972
+
Thr
TGT
[ENA]
¡û
>W2011137860
NWUF01000016
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
35234
35309
+
Thr
TGT
[ENA]
¡û
>W2011490415
RSEL01000013
Alphaproteobacteria
Altererythrobacter rigui KCTC 42620 [RSEL]
183147
183073
-
Thr
TGT
[ENA]
¡û
>W2011619572
SLVC01000006
Alphaproteobacteria
Novosphingobium sp. ST904 [SLVC]
170589
170664
+
Thr
TGT
[ENA]
¡û
>W2012352450
WJPL01000003
Alphaproteobacteria
Alphaproteobacteria bacterium HT1-32 [WJPL]
726548
726623
+
Thr
TGT
[ENA]
¡û
>W2110027725
BMJJ01000015
Alphaproteobacteria
Aureimonas glaciei CGMCC 1.15493 [BMJJ]
4258
4183
-
Thr
TGT
[ENA]
¡û
>W2110250825
JACSDK010000005
Alphaproteobacteria
Pelagibius sp. NBU2595 [JACSDK]
77173
77248
+
Thr
TGT
[ENA]
¡û
>W2110304881
JADCUC010000003
Alphaproteobacteria
Sandaracinobacteroides hominis SZY PN-1 [JADCUC]
188906
188981
+
Thr
TGT
[ENA]
¡û
>W2110652447
JAHVII010000001
Alphaproteobacteria
Qipengyuania flava DP7N21-4 [JAHVII]
2398068
2398143
+
Thr
TGT
[ENA]
¡û
>W2110658333
JAHWRQ010000001
Alphaproteobacteria
Qipengyuania flava DP7N28-2 [JAHWRQ]
2398068
2398143
+
Thr
TGT
[ENA]
¡û
>C201110581
CP042345
Alphaproteobacteria
Novosphingobium ginsenosidimutans FW-6 [CP042345]
254904
254979
+
Thr
TGT
-
¡û
>C211029092
AP025032
Alphaproteobacteria
Aureimonas sp. SA4125 [AP025032]
2576052
2576127
+
Thr
TGT
-
¡û
>C241133145
CP049107
Alphaproteobacteria
Rhizorhabdus phycosphaerae MK52 [CP049107]
1133499
1133574
+
Thr
TGT
-
¡û
>C241286664
CP129106
Alphaproteobacteria
Alteriqipengyuania flavescens [CP129106]
363824
363899
+
Thr
TGT
-
¡û
>W1511581120
LARW01000094
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
10263
10338
+
Thr
TGT
[ENA]
¡û
>W1610535235
JRQQ01000014
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
14910
14835
-
Thr
TGT
[ENA]
¡û
>W1610614826
LGJH01000156
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
132935
132860
-
Thr
TGT
[ENA]
¡û
>W1610724760
LMEJ01000001
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
66825
66900
+
Thr
TGT
[ENA]
¡û
>W1610726263
LMFM01000011
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
67029
67104
+
Thr
TGT
[ENA]
¡û
>W1610729523
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
136340
136265
-
Thr
TGT
[ENA]
¡û
>W1610729638
LMID01000013
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
67413
67488
+
Thr
TGT
[ENA]
¡û
>W1610740537
LMQT01000002
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
87754
87829
+
Thr
TGT
[ENA]
¡û
>W1610740681
LMQW01000022
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
8796
8871
+
Thr
TGT
[ENA]
¡û
>W1610740790
LMQY01000065
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
8760
8835
+
Thr
TGT
[ENA]
¡û
>W1710637704
JRQQ01000014
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
14910
14835
-
Thr
TGT
[ENA]
¡û
>W1710736072
LGJH01000156
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
132935
132860
-
Thr
TGT
[ENA]
¡û
>W1710743472
LGVA01000015
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
65957
65882
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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