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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258486 (83 seq.)
>W1710858017
LMAR01000026
Alphaproteobacteria
Bosea thiooxidans [LMAR]
35028
34953
-
Val
TAC
[ENA]
¡û
>W1710863318
LMFA01000012
Alphaproteobacteria
Rhizobium sp. Root482 [LMFA]
83317
83392
+
Val
TAC
[ENA]
¡û
>W1710876387
LMPE01000010
Alphaproteobacteria
Rhizobium sp. Leaf341 [LMPE]
240997
240922
-
Val
TAC
[ENA]
¡û
>W1710877507
LMQD01000030
Alphaproteobacteria
Rhizobium sp. Leaf383 [LMQD]
80376
80451
+
Val
TAC
[ENA]
¡û
>W1710877520
LMQE01000001
Alphaproteobacteria
Rhizobium sp. Leaf384 [LMQE]
322306
322381
+
Val
TAC
[ENA]
¡û
>W1710877584
LMQF01000033
Alphaproteobacteria
Rhizobium sp. Leaf386 [LMQF]
89366
89441
+
Val
TAC
[ENA]
¡û
>W1710877609
LMQG01000001
Alphaproteobacteria
Rhizobium sp. Leaf391 [LMQG]
672318
672243
-
Val
TAC
[ENA]
¡û
>W1711169148
LVYU01000117
Alphaproteobacteria
Rhizobium leguminosarum [LVYU]
7858
7783
-
Val
TAC
[ENA]
¡û
>W1711385859
MEET01000004
Alphaproteobacteria
Pelagibacterium sp. SCN 63-126 [MEET]
225425
225350
-
Val
TAC
[ENA]
¡û
>W1711667423
MRDM01000002
Alphaproteobacteria
Rhizobium laguerreae [MRDM]
601429
601354
-
Val
TAC
[ENA]
¡û
>WENV180695165
OCZS013127192
[OCZS] soil metagenome; soil
65
140
+
Val
TAC
[ENA]
¡û
>WENV181307540
OFIQ01020011
[OFIQ] marine metagenome; seawater
503
428
-
Val
TAC
[ENA]
¡û
>WENV181416885
OGCL01173339
[OGCL] hot springs metagenome; Hot spring water
294
219
-
Val
TAC
[ENA]
¡û
>WENV170239074
CEQN01013387
[CEQN] marine metagenome genome assembly TARA_078_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4250
4175
-
Val
TAC
[ENA]
¡û
>WENV170383493
CETX01117288
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
277
352
+
Val
TAC
[ENA]
¡û
>WENV170447683
CEUY01348525
[CEUY] marine metagenome genome assembly TARA_123_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
162
237
+
Val
TAC
[ENA]
¡û
>WENV170652957
JRYH01143765
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
310
235
-
Val
TAC
[ENA]
¡û
>W1910501712
FYAS01000007
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
240454
240379
-
Val
TAC
[ENA]
¡û
>W1910847655
NBDP01000016
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
85348
85423
+
Val
TAC
[ENA]
¡û
>W1911398110
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1106375
1106300
-
Val
TAC
[ENA]
¡û
>W1911708763
QOZS01000001
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60015 [QOZS]
176577
176502
-
Val
TAC
[ENA]
¡û
>W1911765802
QXDC01000004
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
847809
847734
-
Val
TAC
[ENA]
¡û
>W1810426027
PYVW01000001
Alphaproteobacteria
Devosia naphthalenivorans CM5-1 [PYVW]
260513
260588
+
Val
TAC
[ENA]
¡û
>W1810426319
PYWB01000011
Alphaproteobacteria
Devosia submarina JCM 18935 [PYWB]
106366
106441
+
Val
TAC
[ENA]
¡û
>W1810671278
QJSR01000001
Alphaproteobacteria
Rhizobium sp. PP-CC-3A-592 [QJSR]
326488
326563
+
Val
TAC
[ENA]
¡û
>W1810671454
QJSV01000001
Alphaproteobacteria
Rhizobium sp. PP-F2F-G20b [QJSV]
76608
76683
+
Val
TAC
[ENA]
¡û
>W1810672256
QJTH01000002
Alphaproteobacteria
Rhizobium sp. PP-F2F-G38 [QJTH]
76020
76095
+
Val
TAC
[ENA]
¡û
>C151074582
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
2355246
2355171
-
Val
TAC
[Ensembl]
¡û
>W2010321972
CACSKD010000002
Alphaproteobacteria
Rhizobium sp. 18055 [CACSKD]
427750
427825
+
Val
TAC
[ENA]
¡û
>W2010421444
FYAS01000007
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
240454
240379
-
Val
TAC
[ENA]
¡û
>W2010437238
JAAAMG010000002
Alphaproteobacteria
Jiella sp. 40Bstr34 [JAAAMG]
124681
124756
+
Val
TAC
[ENA]
¡û
>W2010451717
JAAEAB010000011
Alphaproteobacteria
Rhizobium laguerreae GPTR08 [JAAEAB]
111473
111398
-
Val
TAC
[ENA]
¡û
>W2010508888
JAAMCM010000005
Alphaproteobacteria
Rhizobium skierniewicense Di1472 [JAAMCM]
454102
454027
-
Val
TAC
[ENA]
¡û
>W2010663358
JACBGR010000019
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae FWPou15 [JACBGR]
23453
23378
-
Val
TAC
[ENA]
¡û
>W2010731816
JACIJJ010000001
Alphaproteobacteria
Sphingomonas yantingensis DSM 27244 [JACIJJ]
815966
816041
+
Val
TAC
[ENA]
¡û
>W2010934323
NBDP01000016
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
85348
85423
+
Val
TAC
[ENA]
¡û
>W2011134918
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1106375
1106300
-
Val
TAC
[ENA]
¡û
>W2011281901
QOZS01000001
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60015 [QOZS]
176577
176502
-
Val
TAC
[ENA]
¡û
>W2011556322
SEON01000002
Alphaproteobacteria
Sphingobium fuliginis DSM 18781 [SEON]
815993
816068
+
Val
TAC
[ENA]
¡û
>W2011798238
UCLR01000006
Alphaproteobacteria
Rhizobiales bacterium [UCLR]
100528
100453
-
Val
TAC
[ENA]
¡û
>W2012317708
WEZG01000011
Alphaproteobacteria
Aureimonas sp. YIM DR1026 [WEZG]
137368
137443
+
Val
TAC
[ENA]
¡û
>W2110020585
BMDU01000010
Alphaproteobacteria
Sphingobium fuliginis CCM 7327 [BMDU]
26170
26095
-
Val
TAC
[ENA]
¡û
>W2110093769
CAJCIG010000011
Alphaproteobacteria
Rhodospirillales bacterium [CAJCIG]
46408
46333
-
Val
TAC
[ENA]
¡û
>W2110161730
JAAXQO010000023
Alphaproteobacteria
Rhizobium laguerreae USLR2C [JAAXQO]
64874
64949
+
Val
TAC
[ENA]
¡û
>W2110161946
JAAXQT010000003
Alphaproteobacteria
Rhizobium laguerreae TLR6 [JAAXQT]
584179
584104
-
Val
TAC
[ENA]
¡û
>W2110162038
JAAXQV010000003
Alphaproteobacteria
Rhizobium laguerreae TLR4 [JAAXQV]
540720
540645
-
Val
TAC
[ENA]
¡û
>W2110162672
JAAXRI010000012
Alphaproteobacteria
Rhizobium laguerreae SLR5 [JAAXRI]
69449
69524
+
Val
TAC
[ENA]
¡û
>W2110162858
JAAXRM010000007
Alphaproteobacteria
Rhizobium laguerreae SLR1 [JAAXRM]
126976
127051
+
Val
TAC
[ENA]
¡û
>W2110162890
JAAXRN010000002
Alphaproteobacteria
Rhizobium laguerreae Y2 [JAAXRN]
606877
606802
-
Val
TAC
[ENA]
¡û
>W2110163085
JAAXRR010000029
Alphaproteobacteria
Rhizobium laguerreae SpLR6a [JAAXRR]
61755
61830
+
Val
TAC
[ENA]
¡û
>W2110163377
JAAXRY010000001
Alphaproteobacteria
Rhizobium laguerreae HA2 [JAAXRY]
149411
149486
+
Val
TAC
[ENA]
¡û
>W2110163436
JAAXRZ010000003
Alphaproteobacteria
Rhizobium laguerreae H2 [JAAXRZ]
573068
572993
-
Val
TAC
[ENA]
¡û
>W2110163782
JAAXSG010000012
Alphaproteobacteria
Rhizobium laguerreae MLR63 [JAAXSG]
105212
105137
-
Val
TAC
[ENA]
¡û
>W2110163821
JAAXSH010000007
Alphaproteobacteria
Rhizobium laguerreae MLR6 [JAAXSH]
277509
277434
-
Val
TAC
[ENA]
¡û
>W2110164008
JAAXSK010000020
Alphaproteobacteria
Rhizobium laguerreae MLR56 [JAAXSK]
17932
17857
-
Val
TAC
[ENA]
¡û
>W2110164013
JAAXSL010000001
Alphaproteobacteria
Rhizobium laguerreae MLR51 [JAAXSL]
122125
122200
+
Val
TAC
[ENA]
¡û
>W2110164256
JAAXSQ010000004
Alphaproteobacteria
Rhizobium laguerreae MLR44 [JAAXSQ]
357792
357717
-
Val
TAC
[ENA]
¡û
>W2110164547
JAAXSW010000008
Alphaproteobacteria
Rhizobium laguerreae MLR34 [JAAXSW]
185780
185705
-
Val
TAC
[ENA]
¡û
>W2110171629
JABCNS010000002
Alphaproteobacteria
Rhizobium laguerreae KalkanB [JABCNS]
64566
64641
+
Val
TAC
[ENA]
¡û
>W2110276140
JACVVX010000006
Alphaproteobacteria
Oryzicola mucosus Rool2 [JACVVX]
180503
180578
+
Val
TAC
[ENA]
¡û
>W2110287220
JACYFU010000001
Alphaproteobacteria
Devosia sp. PTR5 [JACYFU]
690471
690546
+
Val
TAC
[ENA]
¡û
>W2110423845
JAEKMH010000001
Alphaproteobacteria
Devosia sediminis MSA67 [JAEKMH]
1349874
1349799
-
Val
TAC
[ENA]
¡û
>W2110515273
JAFMPP010000008
Alphaproteobacteria
Jiella sp. CQZ9-1 [JAFMPP]
14536
14461
-
Val
TAC
[ENA]
¡û
>W2110554969
JAGIPH010000001
Alphaproteobacteria
Neorhizobium galegae DS1499 [JAGIPH]
153136
153211
+
Val
TAC
[ENA]
¡û
>C201110359
CP042331
Alphaproteobacteria
Bosea sp. F3-2 [CP042331]
1548222
1548297
+
Val
TAC
-
¡û
>W2110693216
JAIQVQ010000013
Alphaproteobacteria
Rhizobium sp. VS19-DR96 [JAIQVQ]
1360
1435
+
Val
TAC
[ENA]
¡û
>W2110693345
JAIQVT010000012
Alphaproteobacteria
Rhizobium sp. VS19-DR129.2 [JAIQVT]
150833
150758
-
Val
TAC
[ENA]
¡û
>W2110693417
JAIQVV010000012
Alphaproteobacteria
Rhizobium sp. VS19-DR104.2 [JAIQVV]
1360
1435
+
Val
TAC
[ENA]
¡û
>C201233497
CP050080
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii 31B [CP050080]
1712073
1712148
+
Val
TAC
-
¡û
>C201259478
CP053205
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii TA1 [CP053205]
1424154
1424079
-
Val
TAC
-
¡û
>C211084542
CP050562
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae RCAM2802 [CP050562]
2378920
2378995
+
Val
TAC
-
¡û
>C231249515
CP088090
Alphaproteobacteria
Rhizobium laguerreae WSM1455 [CP088090]
1328210
1328135
-
Val
TAC
-
¡û
>C231249665
CP088104
Alphaproteobacteria
Rhizobium ruizarguesonis TA1 [CP088104]
1426015
1425940
-
Val
TAC
-
¡û
>C231554970
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
488023
488098
+
Val
TAC
-
¡û
>C241320894
CP134779
Alphaproteobacteria
Bosea sp. 685 [CP134779]
2526611
2526686
+
Val
TAC
-
¡û
>W1610720363
LMAR01000026
Alphaproteobacteria
Bosea thiooxidans [LMAR]
35028
34953
-
Val
TAC
[ENA]
¡û
>W1710015495
AQQS01000032
Alphaproteobacteria
Aurantimonas sp. 22II-16-19i [AQQS]
59267
59342
+
Val
TAC
[ENA]
¡û
>W1710540097
FNWM01000002
Alphaproteobacteria
Rhizobium sp. NFR12 [FNWM]
826370
826295
-
Val
TAC
[ENA]
¡û
>W1710558685
FOMB01000035
Alphaproteobacteria
Devosia psychrophila [FOMB]
18330
18255
-
Val
TAC
[ENA]
¡û
>W1710564162
FOQH01000003
Alphaproteobacteria
Albimonas pacifica [FOQH]
504691
504766
+
Val
TAC
[ENA]
¡û
>W1710596418
FTMO01000001
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
66221
66296
+
Val
TAC
[ENA]
¡û
>W1710603273
FUYX01000003
Alphaproteobacteria
Bosea thiooxidans [FUYX]
426125
426200
+
Val
TAC
[ENA]
¡û
>W1710606280
FWXR01000004
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
67727
67652
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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