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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258513 (43 seq.)
>W1711043791
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
185354
185427
+
Thr
TGT
[ENA]
¡û
>W1711377604
MDZB01000109
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
68157
68230
+
Thr
TGT
[ENA]
¡û
>W1711377632
MDZC01000046
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
232340
232413
+
Thr
TGT
[ENA]
¡û
>W1711726867
MTSE01000003
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
609216
609143
-
Thr
TGT
[ENA]
¡û
>W131215981
ATVL01000008
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
2365
2292
-
Thr
TGT
[ENA]
¡û
>WENV180298174
OBJA01201432
[OBJA] soil metagenome; sediment, water from around vicinity
213
140
-
Thr
TGT
[ENA]
¢þ
>WENV180381103
OBOR01128623
[OBOR] marine metagenome; ENVO 00002227
192
265
+
Thr
TGT
[ENA]
¢þ
>WENV180690428
OCZS010006141
[OCZS] soil metagenome; soil
2518
2591
+
Thr
TGT
[ENA]
¢þ
>WENV170019545
BBPD01017866
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
135
208
+
Thr
TGT
[ENA]
¢þ
>WENV170020743
BBPE01021858
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
497
570
+
Thr
TGT
[ENA]
¢þ
>WENV170987796
MWVX01280450
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
421
348
-
Thr
TGT
[ENA]
¢þ
>WENV170988937
MWVY01035348
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
158
234
+
Thr
TGT
[ENA]
¢þ
>WENV170994413
MWWD01104340
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
33
106
+
Thr
TGT
[ENA]
¢þ
>WENV170994414
MWWD01104340
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
271
344
+
Thr
TGT
[ENA]
¢þ
>WENV170998996
MWWJ01198057
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
206
133
-
Thr
TGT
[ENA]
¢þ
>WENV170999187
MWWK01002748
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
1496
1423
-
Thr
TGT
[ENA]
¢þ
>C183003579
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
823522
823595
+
Thr
TGT
-
¡û
>C183003580
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
823634
823707
+
Thr
TGT
-
¡û
>C193001221
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
2205851
2205778
-
Thr
TGT
-
¡û
>C193001222
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
2205718
2205645
-
Thr
TGT
-
¡û
>C193001223
CP031030
Bacteroidota
Runella sp. SP2 [CP031030]
2205596
2205523
-
Thr
TGT
-
¡û
>C191154878
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
2276632
2276705
+
Thr
TGT
-
¡û
>C191183806
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
4486457
4486530
+
Thr
TGT
-
¡û
>W141734728
JNLX01000165
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
19554
19629
+
Thr
TGT
[ENA]
¡û
>W143003505
AXVJ01000022
Bacteroidota
Runella limosa DSM 17973 [AXVJ]
81
8
-
Thr
TGT
[ENA]
¡û
>W1810089883
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
2258573
2258500
-
Thr
TGT
[ENA]
¡û
>C151063989
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
2400541
2400616
+
Thr
TGT
[Ensembl]
¡û
>C151096226
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
1429721
1429648
-
Thr
TGT
-
¡û
>C11300447
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
5291304
5291229
-
Thr
TGT
[Ensembl]
¡û
>C11300448
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
5291191
5291116
-
Thr
TGT
[Ensembl]
¡û
>C123000048
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
153728
153803
+
Thr
TGT
[Ensembl]
¡û
>C123000049
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
153843
153916
+
Thr
TGT
[Ensembl]
¡û
>C161028430
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
3484204
3484129
-
Thr
TGT
[Ensembl]
¡û
>C161043258
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
4495892
4495965
+
Thr
TGT
[Ensembl]
¡û
>C161061555
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
3509835
3509908
+
Thr
TGT
[Ensembl]
¡û
>W121071544
AJYA01000089
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
282
355
+
Thr
TGT
[ENA]
¡û
>W1610885090
LRML01000006
Bacteroidota
Rufibacter roseus [LRML]
185354
185427
+
Thr
TGT
[ENA]
¡û
>W1630019812
LXHX01000114
Bacteroidota
Emticicia sp. MM [LXHX]
38
111
+
Thr
TGT
[ENA]
¡û
>W1730023369
LXHX01000114
Bacteroidota
Emticicia sp. MM [LXHX]
38
111
+
Thr
TGT
[ENA]
¡û
>W1710573721
FOXS01000001
Bacteroidota
Hymenobacter arizonensis [FOXS]
822927
823002
+
Thr
TGT
[ENA]
¡û
>W1710605428
FWWW01000091
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
103176
103249
+
Thr
TGT
[ENA]
¡û
>W1710610161
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
904797
904724
-
Thr
TGT
[ENA]
¡û
>W133004773
AUIF01000012
Bacteroidota
Runella zeae DSM 19591 [AUIF]
225511
225436
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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