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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258668 (27 seq.)
>W1711188725
LWQS01000032
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
41284
41359
+
Gly
GCC
[ENA]
¡û
>W1711188764
LWQS01000114
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
33270
33345
+
Gly
GCC
[ENA]
¡û
>w019627
AAUI01000033
Chloroflexota
Chloroflexus aggregans DSM 9485 [AAUI]
3063
3138
+
Gly
GCC
[ENA]
¡û
>w019620
AAUI01000013
Chloroflexota
Chloroflexus aggregans DSM 9485 [AAUI]
92426
92354
-
Gly
GCC
[ENA]
¡û
>WENV180036524
FVAA010151984
[FVAA] soil metagenome; Soil
74
1
-
Gly
GCC
[ENA]
¢þ
>w001396
AAAH02000010
Chloroflexota
Chloroflexus aurantiacus J-10-fl [AAAH]
68185
68113
-
Gly
GCC
[ENA]
¡û
>w001395
AAAH02000009
Chloroflexota
Chloroflexus aurantiacus J-10-fl [AAAH]
122623
122546
-
Gly
GCC
[ENA]
¡û
>W08009459
ABPG01000006
Chloroflexota
Chloroflexus aurantiacus Y-400-fl [ABPG]
48114
48189
+
Gly
GCC
[ENA]
¡û
>W08009469
ABPG01000011
Chloroflexota
Chloroflexus aurantiacus Y-400-fl [ABPG]
68887
68815
-
Gly
GCC
[ENA]
¡û
>WENV181409506
OGCI01000222
[OGCI] hot springs metagenome; Hot spring water
24846
24921
+
Gly
GCC
[ENA]
¢þ
>WENV181414886
OGCL01001997
[OGCL] hot springs metagenome; Hot spring water
13833
13908
+
Gly
GCC
[ENA]
¢þ
>W141220463
AZXV01000003
Chloroflexota
Chloroflexus sp. Y-396-1 [AZXV]
1066100
1066175
+
Gly
GCC
[ENA]
¡û
>W141220482
AZXV01000004
Chloroflexota
Chloroflexus sp. Y-396-1 [AZXV]
655871
655946
+
Gly
GCC
[ENA]
¡û
>C08002404
CP000909
Chloroflexota
Chloroflexus aurantiacus J-10-fl [CP000909]
3681762
3681837
+
Gly
GCC
[Ensembl]
¡û
>C08002422
CP000909
Chloroflexota
Chloroflexus aurantiacus J-10-fl [CP000909]
1454085
1454013
-
Gly
GCC
[Ensembl]
¡û
>WENV170000593
AFSR01000855
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
1438
1363
-
Gly
GCC
[ENA]
¢þ
>WENV170574664
FLYN01003018
[FLYN] hot springs metagenome; Sediment
4211
4286
+
Gly
GCC
[ENA]
¢þ
>W141804700
JPIM01000006
Chloroflexota
Chloroflexus sp. MS-G [JPIM]
34775
34850
+
Gly
GCC
[ENA]
¡û
>W141804729
JPIM01000091
Chloroflexota
Chloroflexus sp. MS-G [JPIM]
8426
8351
-
Gly
GCC
[ENA]
¡û
>C09102676
CP001337
Chloroflexota
Chloroflexus aggregans DSM 9485 [CP001337]
2000318
2000393
+
Gly
GCC
[Ensembl]
¡û
>C09102716
CP001337
Chloroflexota
Chloroflexus aggregans DSM 9485 [CP001337]
604323
604248
-
Gly
GCC
[Ensembl]
¡û
>C09103226
CP001364
Chloroflexota
Chloroflexus aurantiacus [CP001364]
3676777
3676852
+
Gly
GCC
[Ensembl]
¡û
>C09103245
CP001364
Chloroflexota
Chloroflexus aurantiacus [CP001364]
1455240
1455165
-
Gly
GCC
[Ensembl]
¡û
>W1910654075
LYXE01000090
Chloroflexota
Candidatus Chloroploca asiatica asiatica B7-9 [LYXE]
288422
288497
+
Gly
GCC
[ENA]
¡û
>WENV11100936
AFSR01000855
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
1438
1363
-
Gly
GCC
[ENA]
¡û
>W1610990844
LWQS01000032
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
41284
41359
+
Gly
GCC
[ENA]
¡û
>W1610990883
LWQS01000114
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
33270
33345
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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