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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258701 (118 seq.)
>W1710827191
LLEX01000175
Alphaproteobacteria
Porphyrobacter sp. HL-46 [LLEX]
2057
1982
-
Lys
TTT
[ENA]
¡û
>W1711073697
LSIV01000090
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
54471
54396
-
Lys
TTT
[ENA]
¡û
>W1711073951
LSJB01000308
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
50
125
+
Lys
TTT
[ENA]
¡û
>W1711074271
LSJJ01000106
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
79755
79680
-
Lys
TTT
[ENA]
¡û
>W1711074337
LSJK01000288
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
50
125
+
Lys
TTT
[ENA]
¡û
>W1711074561
LSJQ01000394
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
787
712
-
Lys
TTT
[ENA]
¡û
>W1711074635
LSJS01000100
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
765
690
-
Lys
TTT
[ENA]
¡û
>W1711074968
LSJZ01000380
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
11774
11699
-
Lys
TTT
[ENA]
¡û
>W1711075530
LSKM01000073
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
787
712
-
Lys
TTT
[ENA]
¡û
>W1711075703
LSKQ01000173
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
29807
29732
-
Lys
TTT
[ENA]
¡û
>W1711292845
LZYB01000006
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
74223
74298
+
Lys
TTT
[ENA]
¡û
>W1711385233
MEDW01000078
Alphaproteobacteria
Erythrobacter sp. SCN 62-14 [MEDW]
7921
7846
-
Lys
TTT
[ENA]
¡û
>W131058804
ANFX01000050
Alphaproteobacteria
Porphyrobacter sp. AAP82 [ANFX]
25041
24966
-
Lys
TTT
[ENA]
¡û
>W131060596
ANHY01000006
Alphaproteobacteria
Caenispirillum salinarum AK4 [ANHY]
200112
200187
+
Lys
TTT
[ENA]
¡û
>W131229839
AUHC01000002
Alphaproteobacteria
Erythrobacter cryptus DSM 12079 [AUHC]
248369
248444
+
Lys
TTT
[ENA]
¡û
>W1711766275
MUYG01000006
Alphaproteobacteria
Erythrobacter donghaensis [MUYG]
22611
22536
-
Lys
TTT
[ENA]
¡û
>W1711766357
MUYH01000015
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
492
417
-
Lys
TTT
[ENA]
¡û
>W1711766364
MUYI01000001
Alphaproteobacteria
Erythrobacter dokdonensis [MUYI]
1155287
1155362
+
Lys
TTT
[ENA]
¡û
>W1711766422
MUYJ01000005
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
124087
124012
-
Lys
TTT
[ENA]
¡û
>W1711766479
MUYK01000006
Alphaproteobacteria
Erythrobacter colymbi [MUYK]
25297
25372
+
Lys
TTT
[ENA]
¡û
>C171056593
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1640664
1640589
-
Lys
TTT
-
¡û
>C171057322
CP017113
Alphaproteobacteria
Porphyrobacter sp. LM 6 [CP017113]
733576
733651
+
Lys
TTT
-
¡û
>WENV181222747
OFDC01000169
[OFDC] hot springs metagenome; Water
6348
6423
+
Lys
TTT
[ENA]
¡û
>WENV181226956
OFDN01000567
[OFDN] hot springs metagenome; Water
13826
13751
-
Lys
TTT
[ENA]
¡û
>WENV181234538
OFEU01000305
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
28129
28204
+
Lys
TTT
[ENA]
¡û
>WENV183730405
PJTS01000005
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
138019
137944
-
Lys
TTT
[ENA]
¡û
>WENV183731556
PJTT01000022
[PJTT] soil metagenome; Soil (2) enriched on wood chips
138019
137944
-
Lys
TTT
[ENA]
¡û
>WENV170010128
APMI01009321
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2200
2275
+
Lys
TTT
[ENA]
¡û
>WENV170019546
BBPD01017913
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
647
572
-
Lys
TTT
[ENA]
¡û
>ENV08002248
ABPP01006442
microbial mat metagenome; Guerrero Negro Hypersaline Mat 01; altitude 310m AMSL; sample depth 1m below water level, 0-1mm depth into the mat
312
237
-
Lys
TTT
[ENA]
¡û
>WENV170112036
CEGC01002091
[CEGC] microbial mat metagenome; grass silage
17272
17347
+
Lys
TTT
[ENA]
¡û
>WENV170112089
CEGD01000091
[CEGD] microbial mat metagenome; grass silage
5515
5440
-
Lys
TTT
[ENA]
¡û
>WENV170121313
CENL01105042
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
217
292
+
Lys
TTT
[ENA]
¡û
>WENV170704205
LKMJ01025046
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4352
4427
+
Lys
TTT
[ENA]
¡û
>WENV170710030
LNFM01001084
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
23350
23425
+
Lys
TTT
[ENA]
¡û
>WENV170711008
LNFM01003263
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
33043
32968
-
Lys
TTT
[ENA]
¡û
>WENV170711694
LNFM01006531
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19910
19835
-
Lys
TTT
[ENA]
¡û
>WENV170713613
LNFM01035866
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4730
4655
-
Lys
TTT
[ENA]
¡û
>WENV170714852
LNFM01107487
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
985
910
-
Lys
TTT
[ENA]
¡û
>WENV170962226
MRWF01009211
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
383
458
+
Lys
TTT
[ENA]
¡û
>WENV170963619
MRWG01000382
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
3448
3373
-
Lys
TTT
[ENA]
¡û
>WENV170964630
MRWG01025516
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
9
84
+
Lys
TTT
[ENA]
¡û
>WENV170964722
MRWG01034643
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
9
84
+
Lys
TTT
[ENA]
¡û
>WENV170964842
MRWG01055673
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
370
445
+
Lys
TTT
[ENA]
¡û
>W141484927
JFYZ01000002
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
293151
293226
+
Lys
TTT
[ENA]
¡û
>C181069555
CP022600
Alphaproteobacteria
Porphyrobacter sp. HT-58-2 [CP022600]
837380
837455
+
Lys
TTT
-
¡û
>C181169801
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
14384
14309
-
Lys
TTT
-
¡û
>C191123057
CP034328
Alphaproteobacteria
Tabrizicola piscis K13M18 [CP034328]
2441251
2441326
+
Lys
TTT
-
¡û
>C191188851
CP041222
Alphaproteobacteria
Porphyrobacter sp. YT40 [CP041222]
291068
290993
-
Lys
TTT
-
¡û
>W141804430
JPHU01000006
Alphaproteobacteria
Parvularcula oceani [JPHU]
100181
100106
-
Lys
TTT
[ENA]
¡û
>W141820322
JQMU01000001
Alphaproteobacteria
Porphyrobacter sp. HL-46 [JQMU]
977795
977720
-
Lys
TTT
[ENA]
¡û
>W1910651525
LYMM01000062
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
683
608
-
Lys
TTT
[ENA]
¡û
>W1911497383
OCNJ01000003
Alphaproteobacteria
Caenispirillum bisanense USBA 140 [OCNJ]
387750
387825
+
Lys
TTT
[ENA]
¡û
>W1911538662
OMOQ01000002
Alphaproteobacteria
Defluviimonas aquaemixtae CECT 8626 [OMOQ]
412247
412322
+
Lys
TTT
[ENA]
¡û
>W1911696784
QMJY01000080
Alphaproteobacteria
Rhodobacter sp. YIM 73036 [QMJY]
19360
19435
+
Lys
TTT
[ENA]
¡û
>W1911705527
QOKZ01000007
Alphaproteobacteria
Paracoccus sp. 4-2 [QOKZ]
137579
137504
-
Lys
TTT
[ENA]
¡û
>W1810110849
PHIG01000032
Alphaproteobacteria
Minwuia thermotolerans SY3-13 [PHIG]
6060
5985
-
Lys
TTT
[ENA]
¡û
>W1810138057
PIGG01000031
Alphaproteobacteria
Minwuia thermotolerans SY3-15 [PIGG]
6060
5985
-
Lys
TTT
[ENA]
¡û
>W1810444980
PZKF01000005
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
58802
58727
-
Lys
TTT
[ENA]
¡û
>W1810887576
QUQO01000001
Alphaproteobacteria
Parvularcula marina SM1705 [QUQO]
352920
352845
-
Lys
TTT
[ENA]
¡û
>W1810917927
QWEY01000009
Alphaproteobacteria
Pseudotabrizicola alkalilacus DJC [QWEY]
171141
171216
+
Lys
TTT
[ENA]
¡û
>C151048368
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
3518318
3518393
+
Lys
TTT
[Ensembl]
¡û
>W2010439006
JAAATW010000001
Alphaproteobacteria
Rhodobacter sp. CCP-1 [JAAATW]
1370992
1370917
-
Lys
TTT
[ENA]
¡û
>W2010635130
JABUHN010000001
Alphaproteobacteria
Tabrizicola sp. SY72 [JABUHN]
136898
136823
-
Lys
TTT
[ENA]
¡û
>W2010699970
JACHFM010000005
Alphaproteobacteria
Amaricoccus macauensis DSM 101730 [JACHFM]
177221
177296
+
Lys
TTT
[ENA]
¡û
>W2010752005
JACLQD010000003
Alphaproteobacteria
Gemmobacter straminiformis CAM-8 [JACLQD]
177009
176934
-
Lys
TTT
[ENA]
¡û
>W2010796760
LYMM01000062
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
683
608
-
Lys
TTT
[ENA]
¡û
>W2011158287
OCNJ01000003
Alphaproteobacteria
Caenispirillum bisanense USBA 140 [OCNJ]
387750
387825
+
Lys
TTT
[ENA]
¡û
>W2011276832
QMJY01000080
Alphaproteobacteria
Rhodobacter sp. YIM 73036 [QMJY]
19360
19435
+
Lys
TTT
[ENA]
¡û
>W2011460613
RPEM01000002
Alphaproteobacteria
Tabrizicola sp. DRYC-M-16 [RPEM]
16483
16558
+
Lys
TTT
[ENA]
¡û
>W2011616135
SJZH01000010
Alphaproteobacteria
Tabrizicola sp. YIM 78059 [SJZH]
100522
100447
-
Lys
TTT
[ENA]
¡û
>W2012034969
VHSH01000005
Alphaproteobacteria
Rhodospirillaceae bacterium R148 [VHSH]
380063
379988
-
Lys
TTT
[ENA]
¡û
>W2012098869
VNWN01000006
Alphaproteobacteria
Sneathiella chinensis LMG23452 [VNWN]
502694
502769
+
Lys
TTT
[ENA]
¡û
>W2012437489
WTUW01000002
Alphaproteobacteria
Sneathiella sp. DP05 [WTUW]
165513
165438
-
Lys
TTT
[ENA]
¡û
>W2012438995
WTYJ01000003
Alphaproteobacteria
Altererythrobacter xixiisoli S36 [WTYJ]
290290
290365
+
Lys
TTT
[ENA]
¡û
>W2012439514
WTYV01000001
Alphaproteobacteria
Altererythrobacter buctensis M0322 [WTYV]
96274
96349
+
Lys
TTT
[ENA]
¡û
>W2110016791
BLTI01000008
Alphaproteobacteria
Novosphingobium sp. PY1 [BLTI]
498281
498206
-
Lys
TTT
[ENA]
¡û
>W2110025177
BMHK01000006
Alphaproteobacteria
Novosphingobium endophyticum CGMCC 1.15095 [BMHK]
120650
120575
-
Lys
TTT
[ENA]
¡û
>W2110050774
BMZS01000004
Alphaproteobacteria
Thalassobaculum fulvum KCTC 42651 [BMZS]
1759
1684
-
Lys
TTT
[ENA]
¡û
>W2110196000
JABXWS010000044
Alphaproteobacteria
Novosphingobium sp. HR1a [JABXWS]
6909
6834
-
Lys
TTT
[ENA]
¡û
>W2110511599
JAFLNC010000005
Alphaproteobacteria
Sneathiella sp. CAU 1612 [JAFLNC]
157483
157408
-
Lys
TTT
[ENA]
¡û
>C211319955
CP073261
Alphaproteobacteria
Erythrobacter sp. [CP073261]
340004
339929
-
Lys
TTT
-
¡û
>C211344531
CP076361
Alphaproteobacteria
Gemmobacter sp. con5 [CP076361]
2193425
2193350
-
Lys
TTT
-
¡û
>W1510024399
CCBH010000174
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
59058
59133
+
Lys
TTT
[ENA]
¡û
>C231405873
CP098747
Alphaproteobacteria
Sneathiella sp. PHK-P5 [CP098747]
2092784
2092709
-
Lys
TTT
-
¡û
>C231596780
CP117516
Alphaproteobacteria
Erythrobacter sp. BLCC-B19 [CP117516]
1605643
1605718
+
Lys
TTT
-
¡û
>C231636179
CP121113
Alphaproteobacteria
Paracoccaceae bacterium S2 [CP121113]
497175
497100
-
Lys
TTT
-
¡û
>C241282396
CP128492
Alphaproteobacteria
Novosphingobium resinovorum HR1a [CP128491, CP128492]
2215775
2215700
-
Lys
TTT
-
¡û
>C241328109
CP136573
Alphaproteobacteria
Erythrobacter sp. [CP136573]
2363883
2363958
+
Lys
TTT
-
¡û
>C241329668
CP136758
Alphaproteobacteria
Parvularcula sp. LCG005 [CP136758]
1586279
1586204
-
Lys
TTT
-
¡û
>C241360415
CP141285
Alphaproteobacteria
Altererythrobacter sp. H2 [CP141285]
1234028
1233953
-
Lys
TTT
-
¡û
>W2130043279
NHSP01000074
Alphaproteobacteria
Rhodobacter veldkampii DSM 11550 [NHSP]
22686
22611
-
Lys
TTT
[ENA]
¡û
>W2310022497
BSFC01000003
Alphaproteobacteria
Novosphingobium resinovorum VKM B-1172 [BSFC]
201396
201321
-
Lys
TTT
[ENA]
¡û
>W2310023921
BSNF01000008
Alphaproteobacteria
Sneathiella chinensis NBRC 103408 [BSNF]
509089
509164
+
Lys
TTT
[ENA]
¡û
>C11116172
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2077556
2077631
+
Lys
TTT
[Ensembl]
¡û
>W1511564781
LAEA01000253
Alphaproteobacteria
Rhodospirillaceae bacterium BRH_c57 [LAEA]
2123
2048
-
Lys
TTT
[ENA]
¡û
>W1511590529
LBHB01000002
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
803319
803394
+
Lys
TTT
[ENA]
¡û
>C161093665
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
1365555
1365630
+
Lys
TTT
[Ensembl]
¡û
>C161094029
CP016093
Alphaproteobacteria
Rhizobiales bacterium NRL2 [CP016093]
2508162
2508237
+
Lys
TTT
-
¡û
>WENV060087
AACY023385909
Marine microbial communities from Global Ocean Sampling (GOS)
1082
1005
-
Lys
CTT
[ENA]
>W1610071225
BCTX01000015
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
10393
10468
+
Lys
TTT
[ENA]
¡û
>W121009682
AGFM01000008
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
107178
107103
-
Lys
TTT
[ENA]
¡û
>W121119242
ALVC01000301
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
1934
1859
-
Lys
TTT
[ENA]
¡û
>W1610690468
LLEX01000175
Alphaproteobacteria
Porphyrobacter sp. HL-46 [LLEX]
2057
1982
-
Lys
TTT
[ENA]
¡û
>W1610913002
LSIV01000090
Alphaproteobacteria
Caulobacter sp. CCH4-E1 [LSIV]
54471
54396
-
Lys
TTT
[ENA]
¡û
>W1610913256
LSJB01000308
Alphaproteobacteria
Erythrobacter donghaensis [LSJB]
50
125
+
Lys
TTT
[ENA]
¡û
>W1610913576
LSJJ01000106
Alphaproteobacteria
Erythrobacter donghaensis [LSJJ]
79755
79680
-
Lys
TTT
[ENA]
¡û
>W1610913642
LSJK01000288
Alphaproteobacteria
Erythrobacter donghaensis [LSJK]
50
125
+
Lys
TTT
[ENA]
¡û
>W1610913866
LSJQ01000394
Alphaproteobacteria
Erythrobacter donghaensis [LSJQ]
787
712
-
Lys
TTT
[ENA]
¡û
>W1610913940
LSJS01000100
Alphaproteobacteria
Erythrobacter donghaensis [LSJS]
765
690
-
Lys
TTT
[ENA]
¡û
>W1610914273
LSJZ01000380
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
11774
11699
-
Lys
TTT
[ENA]
¡û
>W1610914835
LSKM01000073
Alphaproteobacteria
Erythrobacter donghaensis [LSKM]
787
712
-
Lys
TTT
[ENA]
¡û
>W1610915008
LSKQ01000173
Alphaproteobacteria
Erythrobacter sp. CCH5-A1 [LSKQ]
29807
29732
-
Lys
TTT
[ENA]
¡û
>W1611050061
LZYB01000006
Alphaproteobacteria
Erythrobacter dokdonensis DSW-74 [LZYB]
74223
74298
+
Lys
TTT
[ENA]
¡û
>W1710068590
BCTX01000015
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
10393
10468
+
Lys
TTT
[ENA]
¡û
>W1710516804
FNCV01000003
Alphaproteobacteria
Roseospirillum parvum [FNCV]
54977
54902
-
Lys
TTT
[ENA]
¡û
>W1710593230
FRDF01000016
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
97427
97502
+
Lys
TTT
[ENA]
¡û
>W1710604551
FVZE01000001
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
383648
383723
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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