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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258853 (58 seq.)
>W1711078547
LSMZ01000049
Bacillota
Clostridium sp. link-BC1 [LSMZ]
3402
3477
+
Trp
CCA
[ENA]
¡û
>W1711091116
LTBC01000018
Bacillota
Moorella mulderi DSM 14980 [LTBC]
22846
22771
-
Trp
CCA
[ENA]
¡û
>W1711222519
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
963290
963365
+
Trp
CCA
[ENA]
¡û
>W131218728
ATXZ01000003
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
59410
59337
-
Trp
CCA
[ENA]
¡û
>W1711658806
MQNM01000067
Bacillota
Megasphaera cerevisiae [MQNM]
227
302
+
Trp
CCA
[ENA]
¡û
>C007157
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
828365
828290
-
Trp
CCA
[Ensembl]
¡û
>C018186
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
1443171
1443246
+
Trp
CCA
[Ensembl]
¡û
>WENV181290351
OFHA01023536
[OFHA] mouse gut metagenome; faeces
1672
1747
+
Trp
CCA
[ENA]
¢þ
>W141147503
AWXA01000027
Bacillota
Megasphaera vaginalis (ex Srinivasan et al. 2021) BV3C16-1 [AWXA]
79
154
+
Trp
CCA
[ENA]
¡û
>W08011383
ABVG01000007
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
43388
43316
-
Trp
CCA
[ENA]
¡û
>W141251470
CBQO010000018
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
178776
178701
-
Trp
CCA
[ENA]
¡û
>W141265767
CCFK01000007
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
280770
280695
-
Trp
CCA
[ENA]
¡û
>W141267365
CCNN01000007
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
280770
280695
-
Trp
CCA
[ENA]
¡û
>WENV170562213
CZCB01001430
[CZCB] anaerobic digester metagenome; anaerobic digester
1325
1400
+
Trp
CCA
[ENA]
¢þ
>WENV170562751
CZCB01005043
[CZCB] anaerobic digester metagenome; anaerobic digester
1087
1012
-
Trp
CCA
[ENA]
¢þ
>WENV170688086
LFRM01227516
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
56540
56465
-
Trp
CCA
[ENA]
¢þ
>WENV170689901
LFRM01316727
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2248
2173
-
Trp
CCA
[ENA]
¢þ
>WENV170690003
LFRM01321321
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
20805
20880
+
Trp
CCA
[ENA]
¢þ
>WENV170716786
LSQX01011570
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5771
5696
-
Trp
CCA
[ENA]
¢þ
>WENV170718529
LSQX01080364
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
987
1062
+
Trp
CCA
[ENA]
¢þ
>W09100458
AABG04000028
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
17590
17515
-
Trp
CCA
[ENA]
¡û
>W09135650
ACVX01000007
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
101155
101080
-
Trp
CCA
[ENA]
¡û
>C181114030
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
2131790
2131865
+
Trp
CCA
-
¡û
>C181136168
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2342147
2342072
-
Trp
CCA
-
¡û
>C191184284
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
3129632
3129557
-
Trp
CCA
-
¡û
>W1910180066
BJKN01000002
Bacillota
Moorella sp. E308F [BJKN]
332347
332422
+
Trp
CCA
[ENA]
¡û
>W1910180117
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
2858154
2858079
-
Trp
CCA
[ENA]
¡û
>W1910213052
FMJL01000037
Bacillota
Clostridium sp. N3C [FMJL]
13397
13322
-
Trp
CCA
[ENA]
¡û
>W1911496655
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
2215732
2215657
-
Trp
CCA
[ENA]
¡û
>W1911502824
OEQB01000003
Bacillota
Megasphaera vaginalis (ex Bordigoni et al. 2020) Marseille-P4857 [OEQB]
326295
326220
-
Trp
CCA
[ENA]
¡û
>W1911572322
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
1813840
1813915
+
Trp
CCA
[ENA]
¡û
>W1810367315
PVXM01000004
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
64409
64484
+
Trp
CCA
[ENA]
¡û
>C151036039
CP008713
Bacillota
Candidatus Arthromitus sp. SFB-mouse-NL [CP008713]
1353906
1353831
-
Trp
CCA
[Ensembl]
¡û
>C11101120
AP012202
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Japan [AP012202]
1361985
1361910
-
Trp
CCA
[Ensembl]
¡û
>C11101157
AP012209
Bacillota
Candidatus Arthromitus sp. SFB-mouse-Yit [AP012209]
1328418
1328343
-
Trp
CCA
[Ensembl]
¡û
>C11106474
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
1810191
1810266
+
Trp
CCA
[Ensembl]
¡û
>W1511656942
LEKT01000077
Bacillota
Megasphaera cerevisiae DSM 20462 [LEKT]
8504
8429
-
Trp
CCA
[ENA]
¡û
>W11177319
AGAG01000001
Bacillota
Candidatus Arthromitus sp. SFB-mouse sp. SFB-mouse-NYU [AGAG]
300958
301033
+
Trp
CCA
[ENA]
¡û
>C161060783
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
1813840
1813915
+
Trp
CCA
-
¡û
>C161097535
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
1814311
1814386
+
Trp
CCA
-
¡û
>W121061321
AJGS01000067
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
101176
101101
-
Trp
CCA
[ENA]
¡û
>W121061350
AJGT01000015
Bacillota
Acetivibrio thermocellus YS [AJGT]
136737
136812
+
Trp
CCA
[ENA]
¡û
>W121006937
AFXS01000290
Bacillota
Candidatus Arthromitus sp. SFB-2 [AFXS]
15569
15494
-
Trp
CCA
[ENA]
¡û
>W121006956
AFXT01000286
Bacillota
Candidatus Arthromitus sp. SFB-3 [AFXT]
7513
7438
-
Trp
CCA
[ENA]
¡û
>W121006983
AFXU01000271
Bacillota
Candidatus Arthromitus sp. SFB-4 [AFXU]
9686
9611
-
Trp
CCA
[ENA]
¡û
>W121006985
AFXV01000019
Bacillota
Candidatus Arthromitus sp. SFB-5 [AFXV]
4807
4732
-
Trp
CCA
[ENA]
¡û
>W121007012
AFXW01000080
Bacillota
Candidatus Arthromitus sp. SFB-co [AFXW]
544
619
+
Trp
CCA
[ENA]
¡û
>W121021262
AGVP01000008
Bacillota
Candidatus Arthromitus sp. SFB-mouse-SU [AGVP]
201697
201622
-
Trp
CCA
[ENA]
¡û
>W1610605609
LFSC01000040
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
56540
56465
-
Trp
CCA
[ENA]
¡û
>W1610605983
LFSL01000139
Bacillota
Clostridiales bacterium DTU058 [LFSL]
20805
20880
+
Trp
CCA
[ENA]
¡û
>W1610925315
LTBC01000018
Bacillota
Moorella mulderi DSM 14980 [LTBC]
22846
22771
-
Trp
CCA
[ENA]
¡û
>W1710523053
FNHQ01000030
Bacillota
Megasphaera paucivorans [FNHQ]
429
504
+
Trp
CCA
[ENA]
¡û
>W1710584062
FQVH01000001
Bacillota
Caldanaerobius fijiensis DSM 17918 [FQVH]
92485
92558
+
Trp
CCA
[ENA]
¡û
>W1710588665
FQZO01000001
Bacillota
Clostridium amylolyticum [FQZO]
138658
138733
+
Trp
CCA
[ENA]
¡û
>W1710601289
FUXD01000070
Bacillota
Megasphaera cerevisiae DSM 20462 [FUXD]
8544
8469
-
Trp
CCA
[ENA]
¡û
>W1710602347
FUYD01000004
Bacillota
Clostridium sp. USBA 49 [FUYD]
161257
161332
+
Trp
CCA
[ENA]
¡û
>W1710726896
LFSC01000040
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
56540
56465
-
Trp
CCA
[ENA]
¡û
>W1710727270
LFSL01000139
Bacillota
Clostridiales bacterium DTU058 [LFSL]
20805
20880
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK