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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258853 (30 seq.)
>WENV180506020
OCAQ01062889
[OCAQ] human gut metagenome; faeces
100
25
-
Thr
GGT
[ENA]
¡û
>WENV181194952
OEQR01026341
[OEQR] metagenome; Caecal content
329
254
-
Thr
GGT
[ENA]
¡û
>WENV181196906
OEQZ01001275
[OEQZ] metagenome; Caecal content
1962
2037
+
Thr
GGT
[ENA]
¡û
>WENV181197260
OERA01006296
[OERA] metagenome; Caecal content
693
618
-
Thr
GGT
[ENA]
¡û
>WENV181199886
OERI01016594
[OERI] metagenome; Caecal content
494
419
-
Thr
GGT
[ENA]
¡û
>WENV181203472
OERW01000103
[OERW] metagenome; Caecal content
25770
25845
+
Thr
GGT
[ENA]
¡û
>WENV181204652
OERZ01004276
[OERZ] metagenome; Caecal content
995
920
-
Thr
GGT
[ENA]
¡û
>WENV181331612
OFLZ01012026
[OFLZ] human gut metagenome; human gut
765
840
+
Thr
GGT
[ENA]
¡û
>WENV181344947
OFMK01009435
[OFMK] human gut metagenome; human gut
78
3
-
Thr
GGT
[ENA]
¡û
>WENV181346517
OFML01028789
[OFML] human gut metagenome; human gut
979
904
-
Thr
GGT
[ENA]
¡û
>WENV181364204
OFOU01028879
[OFOU] human gut metagenome; human gut
118
193
+
Thr
GGT
[ENA]
¡û
>WENV181755678
OGQS01010419
[OGQS] human gut metagenome; faeces
1959
1884
-
Thr
GGT
[ENA]
¡û
>WENV182598588
OJJD01007571
[OJJD] metagenome; faeces
1247
1322
+
Thr
GGT
[ENA]
¡û
>WENV182772769
OJRY01006876
[OJRY] human gut metagenome; human gut
1704
1779
+
Thr
GGT
[ENA]
¡û
>WENV182774130
OJRZ01022187
[OJRZ] human gut metagenome; human gut
838
913
+
Thr
GGT
[ENA]
¡û
>WENV183086988
OLJF01119189
[OLJF] metagenome; faeces
154
229
+
Thr
GGT
[ENA]
¡û
>WENV183103817
OLNJ01009260
[OLNJ] human gut metagenome; faeces
140
65
-
Thr
GGT
[ENA]
¡û
>WENV183313028
OLVP01003889
[OLVP] human gut metagenome; faeces
900
825
-
Thr
GGT
[ENA]
¡û
>WENV183356333
OLXE01004138
[OLXE] human gut metagenome; feces
2993
3068
+
Thr
GGT
[ENA]
¡û
>WENV183758033
PPYE01172754
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
936
861
-
Thr
GGT
[ENA]
¡û
>WENV183758122
PPYE01174367
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
452
527
+
Thr
GGT
[ENA]
¡û
>W141731918
JNJN01000051
Bacillota
Agathobaculum desmolans ATCC 43058 [JNJN]
21023
21098
+
Thr
GGT
[ENA]
¡û
>W1911539058
OMPN01000001
Bacillota
Intestinibacillus sp. Marseille-P4005 [OMPN]
1616044
1616119
+
Thr
GGT
[ENA]
¡û
>W2010250369
CABIYD020000009
Bacillota
Clostridiales bacterium [CABIYD]
76406
76331
-
Thr
GGT
[ENA]
¡û
>W2011169333
OMPN01000001
Bacillota
Intestinibacillus sp. Marseille-P4005 [OMPN]
1616044
1616119
+
Thr
GGT
[ENA]
¡û
>W2011957241
UYYD01000002
Bacillota
Agathobaculum sp. Marseille-P7918 [UYYD]
448775
448850
+
Thr
GGT
[ENA]
¡û
>W2011957253
UYYD01000004
Bacillota
Agathobaculum sp. Marseille-P7918 [UYYD]
995
1070
+
Thr
GGT
[ENA]
¡û
>W2110245907
JACOPL010000010
Bacillota
Agathobaculum sp. NSJ-28 [JACOPL]
72509
72434
-
Thr
GGT
[ENA]
¡û
>W1610058736
BCAB01000022
Bacillota
Clostridia bacterium UC5.1-1D1 [BCAB]
14098
14023
-
Thr
GGT
[ENA]
¡û
>W1710055495
BCAB01000022
Bacillota
Clostridia bacterium UC5.1-1D1 [BCAB]
14098
14023
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK