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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.258910 (49 seq.)
>W1711117030
LUCV01000007
Gammaproteobacteria
Pseudomonas putida [LUCV]
70723
70648
-
His
GTG
[ENA]
¡û
>W1711117032
LUCV01000007
Gammaproteobacteria
Pseudomonas putida [LUCV]
70437
70362
-
His
GTG
[ENA]
¡û
>W1711509450
MKZO01000012
Gammaproteobacteria
Pseudomonas putida GM4FR [MKZO]
52283
52208
-
His
GTG
[ENA]
¡û
>W1711509452
MKZO01000012
Gammaproteobacteria
Pseudomonas putida GM4FR [MKZO]
52013
51938
-
His
GTG
[ENA]
¡û
>WENV180374192
OBOJ01115268
[OBOJ] marine metagenome; seawater
147
222
+
His
GTG
[ENA]
¢þ
>WENV180393517
OBPQ01065430
[OBPQ] marine metagenome; polypropylene bottle
201
276
+
His
GTG
[ENA]
¢þ
>W141051106
AMWJ01000100
Gammaproteobacteria
Pseudomonas bharatica CSV86 [AMWJ]
34295
34220
-
His
GTG
[ENA]
¡û
>W141051128
AMWJ01000143
Gammaproteobacteria
Pseudomonas bharatica CSV86 [AMWJ]
11407
11482
+
His
GTG
[ENA]
¡û
>WENV181415266
OGCL01006903
[OGCL] hot springs metagenome; Hot spring water
2393
2468
+
His
GTG
[ENA]
¢þ
>WENV181415436
OGCL01010936
[OGCL] hot springs metagenome; Hot spring water
2256
2181
-
His
GTG
[ENA]
¢þ
>W141216317
AZUT01000016
Gammaproteobacteria
Pseudomonas thermotolerans J53 [AZUT]
18213
18138
-
His
GTG
[ENA]
¡û
>W141236843
BBIR01000040
Gammaproteobacteria
Pseudomonas japonica NBRC 103040 = DSM 22348 [BBIR]
11023
11098
+
His
GTG
[ENA]
¡û
>W141236845
BBIR01000040
Gammaproteobacteria
Pseudomonas japonica NBRC 103040 = DSM 22348 [BBIR]
11295
11370
+
His
GTG
[ENA]
¡û
>WENV170652418
JRYH01002583
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
8469
8544
+
His
GTG
[ENA]
¢þ
>WENV170720824
LSQX01167952
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8551
8626
+
His
GTG
[ENA]
¢þ
>C191089463
CP032419
Gammaproteobacteria
Pseudomonas cavernae K2W31S-8 [CP032419]
2352019
2352094
+
His
GTG
-
¡û
>C191147631
CP035952
Gammaproteobacteria
Pseudomonas tructae SNU WT1 [CP035952]
2220824
2220899
+
His
GTG
-
¡û
>C191147633
CP035952
Gammaproteobacteria
Pseudomonas tructae SNU WT1 [CP035952]
2221109
2221184
+
His
GTG
-
¡û
>W141556122
JHTS01000010
Gammaproteobacteria
Pseudomonas donghuensis P482 [JHTS]
278830
278905
+
His
GTG
[ENA]
¡û
>W141556124
JHTS01000010
Gammaproteobacteria
Pseudomonas donghuensis P482 [JHTS]
279128
279203
+
His
GTG
[ENA]
¡û
>W1910504696
FYDQ01000002
Gammaproteobacteria
Pseudomonas sp. Irchel 3F5 [FYDQ]
519297
519372
+
His
GTG
[ENA]
¡û
>W1910504698
FYDQ01000002
Gammaproteobacteria
Pseudomonas sp. Irchel 3F5 [FYDQ]
519595
519670
+
His
GTG
[ENA]
¡û
>W1910548363
FZOL01000013
Gammaproteobacteria
Pseudomonas japonica DSM 22348 [FZOL]
92726
92651
-
His
GTG
[ENA]
¡û
>W1910548365
FZOL01000013
Gammaproteobacteria
Pseudomonas japonica DSM 22348 [FZOL]
92454
92379
-
His
GTG
[ENA]
¡û
>W1910635753
LNJZ01000006
Gammaproteobacteria
Thiopseudomonas denitrificans X2 [LNJZ]
130612
130687
+
His
GTG
[ENA]
¡û
>W1910766211
MOAM01000046
Gammaproteobacteria
Pseudomonas vranovensis 15D11 [MOAM]
361397
361472
+
His
GTG
[ENA]
¡û
>W1910766213
MOAM01000046
Gammaproteobacteria
Pseudomonas vranovensis 15D11 [MOAM]
361694
361769
+
His
GTG
[ENA]
¡û
>W1911391534
NWCB01000010
Gammaproteobacteria
Pseudomonas donghuensis SVBP6 [NWCB]
147586
147661
+
His
GTG
[ENA]
¡û
>W1911391536
NWCB01000010
Gammaproteobacteria
Pseudomonas donghuensis SVBP6 [NWCB]
147884
147959
+
His
GTG
[ENA]
¡û
>WENV032072
AACY021417474
Marine microbial communities from Global Ocean Sampling (GOS)
2
79
+
His
GTG
[ENA]
>C10101228
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
2328505
2328430
-
His
GTG
[Ensembl]
¡û
>W1510800517
JBOP01000027
Gammaproteobacteria
Pseudomonas putida PA14H7 [JBOP]
23304
23229
-
His
GTG
[ENA]
¡û
>W1510800519
JBOP01000027
Gammaproteobacteria
Pseudomonas putida PA14H7 [JBOP]
23006
22931
-
His
GTG
[ENA]
¡û
>W1511534805
JYOF01000025
Gammaproteobacteria
Pseudomonas sp. 2(2015) 2[2015] [JYOF]
86794
86719
-
His
GTG
[ENA]
¡û
>W1511534807
JYOF01000025
Gammaproteobacteria
Pseudomonas sp. 2(2015) 2[2015] [JYOF]
86497
86422
-
His
GTG
[ENA]
¡û
>W11176181
AFWV01000030
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
12273
12198
-
His
GTG
[ENA]
¡û
>W11178631
AGFC01000053
Gammaproteobacteria
Thiocystis violascens DSM 198 [AGFC]
28606
28681
+
His
GTG
[ENA]
¡û
>C121007023
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
1474739
1474664
-
His
GTG
[Ensembl]
¡û
>W121062740
AJJP01000128
Gammaproteobacteria
Pseudomonas donghuensis HYS [AJJP]
729
654
-
His
GTG
[ENA]
¡û
>W1610085792
CVPF01000177
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
24605
24680
+
His
GTG
[ENA]
¡û
>W121062742
AJJP01000128
Gammaproteobacteria
Pseudomonas donghuensis HYS [AJJP]
431
356
-
His
GTG
[ENA]
¡û
>WENV070009
AACY023792954
Marine microbial communities from Global Ocean Sampling (GOS)
1123
1200
+
His
GTG
[ENA]
>C131001746
CP003051
Gammaproteobacteria
Thioflavicoccus mobilis 8321 [CP003051]
667343
667418
+
His
GTG
[Ensembl]
¡û
>W1610928389
LUCV01000007
Gammaproteobacteria
Pseudomonas putida [LUCV]
70723
70648
-
His
GTG
[ENA]
¡û
>W1610928391
LUCV01000007
Gammaproteobacteria
Pseudomonas putida [LUCV]
70437
70362
-
His
GTG
[ENA]
¡û
>W1710090381
CVPF01000177
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
24605
24680
+
His
GTG
[ENA]
¡û
>W1710527174
FNKV01000001
Gammaproteobacteria
Pseudomonas sp. UC 17F4 [FNKV]
4667798
4667723
-
His
GTG
[ENA]
¡û
>W1710527176
FNKV01000001
Gammaproteobacteria
Pseudomonas sp. UC 17F4 [FNKV]
4667501
4667426
-
His
GTG
[ENA]
¡û
>W1710529454
FNNZ01000002
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
259973
259898
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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