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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259262 (76 seq.)
>W1710926253
LOED01000009
Bacillota
Fervidicola ferrireducens [LOED]
51833
51908
+
Phe
GAA
[ENA]
¡û
>W1710926851
LOES01000116
Bacillota
Clostridia bacterium BRH_c25 [LOES]
3348
3423
+
Phe
GAA
[ENA]
¡û
>W1710932136
LOHZ01000036
Bacillota
Thermovenabulum gondwanense [LOHZ]
25151
25076
-
Phe
GAA
[ENA]
¡û
>W1711409450
MGOS01000020
Bacillota
Clostridiales bacterium GWB2_37_7 [MGOS]
19596
19671
+
Phe
GAA
[ENA]
¡û
>W1711409455
MGOS01000031
Bacillota
Clostridiales bacterium GWB2_37_7 [MGOS]
7724
7649
-
Phe
GAA
[ENA]
¡û
>W131108949
APGP01000053
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
48622
48547
-
Phe
GAA
[ENA]
¡û
>W131218329
ATXO01000022
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
15379
15454
+
Phe
GAA
[ENA]
¡û
>w002164
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
381885
381808
-
Phe
GAA
[ENA]
¡û
>WENV180543175
OCHT01079648
[OCHT] human gut metagenome; human gut
316
241
-
Phe
GAA
[ENA]
¡û
>WENV180710422
ODFM01001344
[ODFM] human metagenome; G_DNA_Stool
3984
3909
-
Phe
GAA
[ENA]
¡û
>WENV180772070
ODIH01024026
[ODIH] human metagenome; G_DNA_Stool
1502
1577
+
Phe
GAA
[ENA]
¡û
>WENV180817792
ODJQ01002759
[ODJQ] human metagenome; G_DNA_Stool
77
2
-
Phe
GAA
[ENA]
¡û
>WENV181026924
ODXC01026815
[ODXC] human metagenome; G_DNA_Stool
161
236
+
Phe
GAA
[ENA]
¡û
>WENV181053951
ODYI01001126
[ODYI] human metagenome; G_DNA_Stool
24389
24464
+
Phe
GAA
[ENA]
¡û
>WENV181054037
ODYI01001488
[ODYI] human metagenome; G_DNA_Stool
11632
11707
+
Phe
GAA
[ENA]
¡û
>WENV181062525
ODYN01249838
[ODYN] human metagenome; G_DNA_Stool
138
213
+
Phe
GAA
[ENA]
¡û
>WENV181089199
OEBA01015951
[OEBA] human metagenome; G_DNA_Stool
1341
1416
+
Phe
GAA
[ENA]
¡û
>WENV181100195
OECI01120760
[OECI] human metagenome; G_DNA_Stool
137
212
+
Phe
GAA
[ENA]
¡û
>WENV181226183
OFDK01000184
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2322
2247
-
Phe
GAA
[ENA]
¡û
>WENV181265207
OFGA01040980
[OFGA] mouse gut metagenome; faeces
163
238
+
Phe
GAA
[ENA]
¡û
>WENV181277766
OFGL01026294
[OFGL] mouse gut metagenome; faeces
345
420
+
Phe
GAA
[ENA]
¡û
>WENV181285479
OFGS01000862
[OFGS] hot springs metagenome; Water and soil
1065
1140
+
Phe
GAA
[ENA]
¡û
>WENV181285502
OFGS01001181
[OFGS] hot springs metagenome; Water and soil
2034
1959
-
Phe
GAA
[ENA]
¡û
>WENV181299898
OFHM01089944
[OFHM] mouse gut metagenome; faeces
26
101
+
Phe
GAA
[ENA]
¡û
>WENV182663289
OJMO01005892
[OJMO] human gut metagenome; feces
3991
4066
+
Phe
GAA
[ENA]
¡û
>WENV183075847
OLIW01000601
[OLIW] human gut metagenome; feces
15381
15306
-
Phe
GAA
[ENA]
¡û
>WENV183419777
OMAZ01038053
[OMAZ] human gut metagenome; feces
586
661
+
Phe
GAA
[ENA]
¡û
>WENV183507009
OMGY01006038
[OMGY] human gut metagenome; human gut
794
719
-
Phe
GAA
[ENA]
¡û
>WENV183759812
PPYE01212502
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3611
3536
-
Phe
GAA
[ENA]
¡û
>WENV170561529
CZCA01012806
[CZCA] anaerobic digester metagenome; anaerobic digester
5082
5157
+
Phe
GAA
[ENA]
¡û
>WENV170562466
CZCB01002978
[CZCB] anaerobic digester metagenome; anaerobic digester
10456
10381
-
Phe
GAA
[ENA]
¡û
>WENV170562889
CZCB01006761
[CZCB] anaerobic digester metagenome; anaerobic digester
30497
30572
+
Phe
GAA
[ENA]
¡û
>WENV170563246
CZCB01012374
[CZCB] anaerobic digester metagenome; anaerobic digester
8484
8559
+
Phe
GAA
[ENA]
¡û
>WENV170685311
LFRM01084171
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
31830
31905
+
Phe
GAA
[ENA]
¡û
>WENV170688557
LFRM01250988
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3420
3345
-
Phe
GAA
[ENA]
¡û
>WENV170689774
LFRM01310959
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
8644
8719
+
Phe
GAA
[ENA]
¡û
>WENV170969864
MTKW01042412
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
161
236
+
Phe
GAA
[ENA]
¡û
>WENV170975931
MTKZ01003291
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
780
855
+
Phe
GAA
[ENA]
¡û
>W141817170
JQKL01000026
Bacillota
Thermanaerosceptrum fracticalcis DRI-13 [JQKL]
3738
3813
+
Phe
GAA
[ENA]
¡û
>C09100826
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
843936
844011
+
Phe
GAA
[Ensembl]
¡û
>W1911726621
QSNL01000022
Bacillota
Thermoanaerobacteraceae bacterium SP2 [QSNL]
15279
15204
-
Phe
GAA
[ENA]
¡û
>W1810071910
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1960531
1960456
-
Phe
GAA
[ENA]
¡û
>W1810368002
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
1610348
1610423
+
Phe
GAA
[ENA]
¡û
>W2010267515
CABKQQ020000006
Bacillota
Desulfitobacterium hafniense [CABKQQ]
4252
4327
+
Phe
GAA
[ENA]
¡û
>W2011291814
QSNL01000022
Bacillota
Thermoanaerobacteraceae bacterium SP2 [QSNL]
15279
15204
-
Phe
GAA
[ENA]
¡û
>W2011623638
SLXT01000001
Bacillota
Heliophilum fasciatum DSM 11170 [SLXT]
50812
50737
-
Phe
GAA
[ENA]
¡û
>W2011623681
SLXT01000032
Bacillota
Heliophilum fasciatum DSM 11170 [SLXT]
24070
23995
-
Phe
GAA
[ENA]
¡û
>W2011623706
SLXT01000063
Bacillota
Heliophilum fasciatum DSM 11170 [SLXT]
1317
1242
-
Phe
GAA
[ENA]
¡û
>W2012096785
VNHO01000007
Bacillota
Thermosediminibacter litoriperuensis DSM 16647 [VNHO]
65838
65913
+
Phe
GAA
[ENA]
¡û
>W2110102840
CAJFSR010000032
Bacillota
Candidatus Neochristensenella gallicola [CAJFSR]
15359
15434
+
Phe
GAA
[ENA]
¡û
>W2110102849
CAJFSR010000040
Bacillota
Candidatus Neochristensenella gallicola [CAJFSR]
1283
1358
+
Phe
GAA
[ENA]
¡û
>C211065336
CP045798
Bacillota
Thermoanaerosceptrum fracticalcis DRI-13 [CP045798]
2554407
2554332
-
Phe
GAA
-
¡û
>C211065346
CP045798
Bacillota
Thermoanaerosceptrum fracticalcis DRI-13 [CP045798]
1314371
1314296
-
Phe
GAA
-
¡û
>C241352319
CP139957
Bacillota
Caldicellulosiruptor danielii DSM 8977 [CP139957]
813959
814034
+
Phe
GAA
-
¡û
>W2310021069
BSDN01000001
Bacillota
Tepidanaerobacter syntrophicus JE [BSDN]
21219
21294
+
Phe
GAA
[ENA]
¡û
>C10103629
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
802380
802455
+
Phe
GAA
[Ensembl]
¡û
>C10113560
CP002131
Bacillota
Thermosediminibacter oceani DSM 16646 [CP002131]
1382169
1382094
-
Phe
GAA
[Ensembl]
¡û
>C11105225
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1971094
1971019
-
Phe
GAA
[Ensembl]
¡û
>C11122565
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
722814
722889
+
Phe
GAA
[Ensembl]
¡û
>W1610061631
BCMU01000005
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
325004
324929
-
Phe
GAA
[ENA]
¡û
>C131020947
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
723381
723456
+
Phe
GAA
-
¡û
>W1610605708
LFSF01000020
Bacillota
Clostridiales bacterium DTU073 [LFSF]
10840
10915
+
Phe
GAA
[ENA]
¡û
>W1610605728
LFSF01000035
Bacillota
Clostridiales bacterium DTU073 [LFSF]
3420
3345
-
Phe
GAA
[ENA]
¡û
>W1610605756
LFSG01000009
Bacillota
Clostridiales bacterium DTU072 [LFSG]
31830
31905
+
Phe
GAA
[ENA]
¡û
>W1610605913
LFSJ01000177
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
8644
8719
+
Phe
GAA
[ENA]
¡û
>W1610783746
LOED01000009
Bacillota
Fervidicola ferrireducens [LOED]
51833
51908
+
Phe
GAA
[ENA]
¡û
>W1610784393
LOES01000116
Bacillota
Clostridia bacterium BRH_c25 [LOES]
3348
3423
+
Phe
GAA
[ENA]
¡û
>W1610789605
LOHZ01000036
Bacillota
Thermovenabulum gondwanense [LOHZ]
25151
25076
-
Phe
GAA
[ENA]
¡û
>W1710059296
BCMU01000005
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
325004
324929
-
Phe
GAA
[ENA]
¡û
>W1710588921
FQZS01000011
Bacillota
Lutispora thermophila DSM 19022 [FQZS]
95346
95271
-
Phe
GAA
[ENA]
¡û
>W1710588934
FQZS01000016
Bacillota
Lutispora thermophila DSM 19022 [FQZS]
42479
42554
+
Phe
GAA
[ENA]
¡û
>W1710592693
FRCR01000001
Bacillota
Caldanaerovirga acetigignens [FRCR]
267082
267157
+
Phe
GAA
[ENA]
¡û
>W1710726995
LFSF01000020
Bacillota
Clostridiales bacterium DTU073 [LFSF]
10840
10915
+
Phe
GAA
[ENA]
¡û
>W1710727015
LFSF01000035
Bacillota
Clostridiales bacterium DTU073 [LFSF]
3420
3345
-
Phe
GAA
[ENA]
¡û
>W1710727043
LFSG01000009
Bacillota
Clostridiales bacterium DTU072 [LFSG]
31830
31905
+
Phe
GAA
[ENA]
¡û
>W1710727200
LFSJ01000177
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
8644
8719
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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