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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259268 (45 seq.)
>W131169882
ARFC01000001
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
924407
924482
+
Gly
CCC
[ENA]
¡û
>W131169939
ARFD01000052
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
1638
1565
-
Gly
CCC
[ENA]
¡û
>W1711606589
MORL01000015
Bacteroidota
Arsenicibacter rosenii [MORL]
22764
22691
-
Gly
CCC
[ENA]
¡û
>W1711769473
MVEC01000019
Bacteroidota
Spirosoma sp. 209 [MVEC]
106987
107062
+
Gly
CCC
[ENA]
¡û
>C171037558
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
2087383
2087310
-
Gly
CCC
-
¡û
>C171104425
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
710557
710632
+
Gly
CCC
-
¡û
>W131181656
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
3040711
3040786
+
Gly
CCC
[ENA]
¡û
>C181113141
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
3877604
3877531
-
Gly
CCC
-
¡û
>W09109930
ABUR01000018
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
151096
151021
-
Gly
CCC
[ENA]
¡û
>W1911497291
OCNH01000005
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
410089
410016
-
Gly
CCC
[ENA]
¡û
>W1911726810
QTJY01000014
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
45040
45113
+
Gly
CCC
[ENA]
¡û
>W1810692096
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
6094785
6094712
-
Gly
CCC
[ENA]
¡û
>W1810745125
QOWE01000002
Bacteroidota
Larkinella punicea zzj9 [QOWE]
294402
294476
+
Gly
CCC
[ENA]
¡û
>SRA1014307
SRR023845.83485
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
195
120
-
Gly
CCC
[SRA]
>C151068612
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
5793853
5793926
+
Gly
CCC
[Ensembl]
¡û
>W2010459327
JAAFZH010000001
Bacteroidota
Spirosoma terrae KCTC 52035 [JAAFZH]
421223
421296
+
Gly
CCC
[ENA]
¡û
>W2010468904
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
316396
316321
-
Gly
CCC
[ENA]
¡û
>W2011158195
OCNH01000005
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
410089
410016
-
Gly
CCC
[ENA]
¡û
>W2011292528
QTJY01000014
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
45040
45113
+
Gly
CCC
[ENA]
¡û
>W2011477498
RQJP01000004
Bacteroidota
Larkinella knui KCTC42998 [RQJP]
454050
453977
-
Gly
CCC
[ENA]
¡û
>W2011532774
SBLB01000008
Bacteroidota
Spirosoma sp. TY50 [SBLB]
217284
217210
-
Gly
CCC
[ENA]
¡û
>W2011705621
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
108551
108626
+
Gly
CCC
[ENA]
¡û
>W2011964846
VBSL01000006
Bacteroidota
Larkinella sp. C7 [VBSL]
372745
372672
-
Gly
CCC
[ENA]
¡û
>W2012146735
VTWS01000004
Bacteroidota
Larkinella sp. MA1 [VTWS]
413110
413037
-
Gly
CCC
[ENA]
¡û
>W2012222107
WAEL01000006
Bacteroidota
Fibrella aestuarina JA25 [WAEL]
189848
189775
-
Gly
CCC
[ENA]
¡û
>W2012311227
WELI01000023
Bacteroidota
Rudanella sp. HX-22-17 [WELI]
21699
21774
+
Gly
CCC
[ENA]
¡û
>W2012355853
WJXZ01000012
Bacteroidota
Larkinella terrae KCTC 52001 [WJXZ]
93581
93654
+
Gly
CCC
[ENA]
¡û
>W2012412158
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
6094785
6094712
-
Gly
CCC
[ENA]
¡û
>W2012412215
WPIN01000038
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
743
670
-
Gly
CCC
[ENA]
¡û
>W2110282945
JACWZY010000015
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
49500
49573
+
Gly
CCC
[ENA]
¡û
>W2110283049
JACXAA010000018
Bacteroidota
Spirosoma validum BT704 [JACXAA]
5657
5730
+
Gly
CCC
[ENA]
¡û
>W2110517345
JAFMYU010000024
Bacteroidota
Fibrella sp. HMF5036 [JAFMYU]
53668
53593
-
Gly
CCC
[ENA]
¡û
>W2110517373
JAFMYV010000008
Bacteroidota
Fibrella sp. HMF5335 [JAFMYV]
271827
271754
-
Gly
CCC
[ENA]
¡û
>W2110517406
JAFMYW010000004
Bacteroidota
Fibrella sp. HMF5405 [JAFMYW]
425861
425934
+
Gly
CCC
[ENA]
¡û
>C201250739
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
1699325
1699398
+
Gly
CCC
-
¡û
>C211124459
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
7871250
7871177
-
Gly
CCC
-
¡û
>C231263205
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
5456099
5456174
+
Gly
CCC
-
¡û
>W2110772277
VFIA01000006
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
11154
11079
-
Gly
CCC
[ENA]
¡û
>W2110772302
VFIC01000003
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
301148
301223
+
Gly
CCC
[ENA]
¡û
>C241057099
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
661003
660930
-
Gly
CCC
-
¡û
>C241140703
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
771379
771304
-
Gly
CCC
-
¡û
>C10111778
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
7130142
7130067
-
Gly
CCC
[Ensembl]
¡û
>C161104982
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
6415470
6415395
-
Gly
CCC
[Ensembl]
¡û
>W1710521867
FNGS01000011
Bacteroidota
Siphonobacter aquaeclarae [FNGS]
155613
155686
+
Gly
CCC
[ENA]
¡û
>W1710558217
FOLQ01000038
Bacteroidota
Spirosoma endophyticum [FOLQ]
18583
18508
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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