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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259303 (16 seq.)
>WENV180282792
OBIC01006019
[OBIC] beach sand metagenome; beach sand
633
558
-
Thr
CGT
[ENA]
¡û
>WENV180344980
OBLL01433739
[OBLL] soil metagenome; soil
96
21
-
Thr
CGT
[ENA]
¡û
>WENV181294235
OFHG01110065
[OFHG] soil metagenome; Clay
396
321
-
Thr
CGT
[ENA]
¡û
>WENV181311552
OFJB01004267
[OFJB] sludge metagenome; sludge
1231
1306
+
Thr
CGT
[ENA]
¡û
>WENV183686198
ORMF010963560
[ORMF] groundwater metagenome; groundwater
500
575
+
Thr
CGT
[ENA]
¡û
>WENV183690350
ORMF011583804
[ORMF] groundwater metagenome; groundwater
263
188
-
Thr
CGT
[ENA]
¡û
>WENV170551090
CXWJ01000062
[CXWJ] wastewater metagenome; activated sludge
257
332
+
Thr
CGT
[ENA]
¡û
>WENV170556644
CXWL01011487
[CXWL] groundwater metagenome; biofilm material
7018
7093
+
Thr
CGT
[ENA]
¡û
>WENV170557514
CXWL01028793
[CXWL] groundwater metagenome; biofilm material
18501
18426
-
Thr
CGT
[ENA]
¡û
>WENV170558256
CXWL01059832
[CXWL] groundwater metagenome; biofilm material
1167
1242
+
Thr
CGT
[ENA]
¡û
>WENV170653662
JRYJ01027163
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1131
1206
+
Thr
CGT
[ENA]
¡û
>W1911738131
QUOQ01000002
Alphaproteobacteria
Brevundimonas sp. NS26 [QUOQ]
374920
374995
+
Thr
CGT
[ENA]
¡û
>W1810000967
BEWU01000012
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
5799
5724
-
Thr
CGT
[ENA]
¡û
>W2011305406
QUOQ01000002
Alphaproteobacteria
Brevundimonas sp. NS26 [QUOQ]
374920
374995
+
Thr
CGT
[ENA]
¡û
>W2110562794
JAGMWN010000010
Alphaproteobacteria
Marivibrio halodurans CGMCC 1.15697 [JAGMWN]
115927
116002
+
Thr
CGT
[ENA]
¡û
>WENV033361
AACY021522575
Marine microbial communities from Global Ocean Sampling (GOS)
416
493
+
Thr
CGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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