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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.25937 (115 seq.)
>W1710861703
LMDV01000004
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
29184
29273
+
Ser
CGA
[ENA]
¡û
>W1710862982
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
733970
734057
+
Ser
CGA
[ENA]
¡û
>W1710863689
LMFI01000002
Actinomycetota
Nocardioides sp. Root140 [LMFI]
56202
56291
+
Ser
CGA
[ENA]
¡û
>W1710863763
LMFJ01000003
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
12528
12615
+
Ser
CGA
[ENA]
¡û
>W1710864904
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1398173
1398084
-
Ser
CGA
[ENA]
¡û
>W1710865623
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
2004762
2004673
-
Ser
CGA
[ENA]
¡û
>W1710866317
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
2051202
2051113
-
Ser
CGA
[ENA]
¡û
>W1710867723
LMIN01000005
Actinomycetota
Nocardioides sp. Root224 [LMIN]
29183
29272
+
Ser
CGA
[ENA]
¡û
>W1710872628
LMMD01000001
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
132012
131923
-
Ser
CGA
[ENA]
¡û
>W1710873647
LMMY01000011
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
118994
118907
-
Ser
CGA
[ENA]
¡û
>W1710874052
LMNH01000002
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
192312
192401
+
Ser
CGA
[ENA]
¡û
>W1710874212
LMNK01000002
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
111697
111608
-
Ser
CGA
[ENA]
¡û
>W1710874313
LMNM01000001
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
138914
138825
-
Ser
CGA
[ENA]
¡û
>W1710874845
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
189146
189235
+
Ser
CGA
[ENA]
¡û
>W1710880671
LMSM01000008
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
535502
535413
-
Ser
CGA
[ENA]
¡û
>W1710880714
LMSN01000016
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
267954
267865
-
Ser
CGA
[ENA]
¡û
>W1710880893
LMSQ01000018
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
1102716
1102627
-
Ser
CGA
[ENA]
¡û
>W1710881058
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1913234
1913323
+
Ser
CGA
[ENA]
¡û
>W1711125358
LUNF01000163
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
3265
3176
-
Ser
CGA
[ENA]
¡û
>W1711125396
LUNG01000043
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
11544
11633
+
Ser
CGA
[ENA]
¡û
>W1711125446
LUNH01000035
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
40510
40599
+
Ser
CGA
[ENA]
¡û
>W1711125495
LUNI01000023
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
28777
28688
-
Ser
CGA
[ENA]
¡û
>W1711125532
LUNJ01000026
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
39109
39020
-
Ser
CGA
[ENA]
¡û
>W1711126696
LUPF01000018
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
36139
36050
-
Ser
CGA
[ENA]
¡û
>W1711126757
LUPH01000017
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
3509
3420
-
Ser
CGA
[ENA]
¡û
>W1711126818
LUPI01000034
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
15344
15433
+
Ser
CGA
[ENA]
¡û
>W1711126841
LUPJ01000032
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
21204
21115
-
Ser
CGA
[ENA]
¡û
>W1711126906
LUPK01000050
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
44592
44681
+
Ser
CGA
[ENA]
¡û
>W1711126930
LUPL01000026
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
7151
7062
-
Ser
CGA
[ENA]
¡û
>W1711126993
LUPM01000401
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
2009
1920
-
Ser
CGA
[ENA]
¡û
>W1711127118
LUPQ01000018
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
43940
44029
+
Ser
CGA
[ENA]
¡û
>W1711430439
MIJB01000003
Actinomycetota
Aeromicrobium sp. PE09-221 [MIJB]
73988
73899
-
Ser
CGA
[ENA]
¡û
>W131155934
AQOZ01000023
Actinomycetota
Nocardioides sp. Iso805N [AQOZ]
111872
111961
+
Ser
CGA
[ENA]
¡û
>W131190771
ASEP01000009
Actinomycetota
Nocardioides sp. CF8 [ASEP]
478
567
+
Ser
CGA
[ENA]
¡û
>WENV180015994
FSTU01000170
[FSTU] metagenome; soil
3414
3503
+
Ser
CGA
[ENA]
¢þ
>WENV180691615
OCZS010165407
[OCZS] soil metagenome; soil
113
202
+
Ser
CGA
[ENA]
¢þ
>WENV181375340
OFQY01076940
[OFQY] wastewater metagenome; Exp Tend VB 10WW
36
125
+
Ser
CGA
[ENA]
¢þ
>WENV170575134
FLYN01035638
[FLYN] hot springs metagenome; Sediment
259
348
+
Ser
CGA
[ENA]
¢þ
>WENV170727477
LULE01000159
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
18874
18785
-
Ser
CGA
[ENA]
¢þ
>WENV170728987
LULF01004220
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
1598
1509
-
Ser
CGA
[ENA]
¢þ
>WENV170729651
LULG01000087
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
40510
40599
+
Ser
CGA
[ENA]
¢þ
>WENV170729937
LULG01004355
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
643
554
-
Ser
CGA
[ENA]
¢þ
>WENV170730978
LULH01014976
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
824
735
-
Ser
CGA
[ENA]
¢þ
>WENV170731804
LULI01004365
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
2009
1920
-
Ser
CGA
[ENA]
¢þ
>WENV170732627
LULJ01000304
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
11544
11633
+
Ser
CGA
[ENA]
¢þ
>WENV170733896
LULK01000326
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
12575
12664
+
Ser
CGA
[ENA]
¢þ
>WENV170735095
LULL01000008
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
44592
44681
+
Ser
CGA
[ENA]
¢þ
>WENV170736245
LULM01000380
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
3265
3176
-
Ser
CGA
[ENA]
¢þ
>WENV170736931
LULN01000110
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
21204
21115
-
Ser
CGA
[ENA]
¢þ
>WENV170737430
LULO01000093
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
15344
15433
+
Ser
CGA
[ENA]
¢þ
>WENV170739330
LULQ01000283
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
12594
12683
+
Ser
CGA
[ENA]
¢þ
>WENV170740340
LULR01006141
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
288
199
-
Ser
CGA
[ENA]
¢þ
>WENV170741814
LULT01006371
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
676
587
-
Ser
CGA
[ENA]
¢þ
>WENV170742244
LULU01006437
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
936
847
-
Ser
CGA
[ENA]
¢þ
>WENV170743446
LULW01000074
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
36139
36050
-
Ser
CGA
[ENA]
¢þ
>WENV170743630
LULW01001066
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
8
97
+
Ser
CGA
[ENA]
¢þ
>WENV170746047
LULZ01005344
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
1431
1520
+
Ser
CGA
[ENA]
¢þ
>WENV170758849
LUMS01000058
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
11104
11015
-
Ser
CGA
[ENA]
¢þ
>WENV170759220
LUMS01006534
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
521
610
+
Ser
CGA
[ENA]
¢þ
>WENV170759615
LUMT01000033
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
28777
28688
-
Ser
CGA
[ENA]
¢þ
>WENV170760765
LUMU01000069
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
43940
44029
+
Ser
CGA
[ENA]
¢þ
>WENV170761343
LUMV01000031
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
39109
39020
-
Ser
CGA
[ENA]
¢þ
>WENV170762026
LUMW01000502
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
10575
10486
-
Ser
CGA
[ENA]
¢þ
>C181119571
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
3614584
3614673
+
Ser
CGA
-
¡û
>C181144009
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
203424
203511
+
Ser
CGA
-
¡û
>C191104177
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
198738
198827
+
Ser
CGA
-
¡û
>C191159450
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
1505825
1505912
+
Ser
CGA
-
¡û
>W09127761
ACLF01000371
Actinomycetota
Aeromicrobium marinum DSM 15272 [ACLF]
359
448
+
Ser
CGA
[ENA]
¡û
>W141564313
JIAR01000003
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
35356
35445
+
Ser
CGA
[ENA]
¡û
>W141564503
JIAV01000012
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
217894
217983
+
Ser
CGA
[ENA]
¡û
>W1910141241
BIFF01000002
Actinomycetota
Nocardioides sp. LS1 [BIFF]
935512
935423
-
Ser
CGA
[ENA]
¡û
>W1911693678
QLVF01000001
Actinomycetota
Aeromicrobium lacus CPCC 204604 [QLVF]
6002
6091
+
Ser
CGA
[ENA]
¡û
>W1810157305
PJBV01000022
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
91
2
-
Ser
CGA
[ENA]
¡û
>W1810427495
PYXZ01000001
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
942822
942910
+
Ser
CGA
[ENA]
¡û
>W1810462641
PZYX01000014
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
81435
81524
+
Ser
CGA
[ENA]
¡û
>W1810462670
PZYY01000004
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
448153
448064
-
Ser
CGA
[ENA]
¡û
>W1810462729
PZYZ01000004
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
166862
166773
-
Ser
CGA
[ENA]
¡û
>W1810675406
QKKY01000001
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
6002
6091
+
Ser
CGA
[ENA]
¡û
>W1810756461
QPFD01000006
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
159707
159796
+
Ser
CGA
[ENA]
¡û
>C161036393
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
3181969
3181880
-
Ser
CGA
[Ensembl]
¡û
>W1610048744
BBEJ01000079
Actinomycetota
Nocardioides sp. DN36 [BBEJ]
198
288
+
Ser
CGA
[ENA]
¡û
>W1610051404
BBGV01000626
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
871
782
-
Ser
CGA
[ENA]
¡û
>W1610068498
BCRJ01000079
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
13031
13120
+
Ser
CGA
[ENA]
¡û
>W1610724049
LMDV01000004
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
29184
29273
+
Ser
CGA
[ENA]
¡û
>W1610725328
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
733970
734057
+
Ser
CGA
[ENA]
¡û
>W1610726035
LMFI01000002
Actinomycetota
Nocardioides sp. Root140 [LMFI]
56202
56291
+
Ser
CGA
[ENA]
¡û
>W1610726109
LMFJ01000003
Actinomycetota
Aeromicrobium sp. Root495 [LMFJ]
12528
12615
+
Ser
CGA
[ENA]
¡û
>W1610727969
LMGV01000001
Actinomycetota
Nocardioides sp. Root614 [LMGV]
2004762
2004673
-
Ser
CGA
[ENA]
¡û
>W1610728663
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
2051202
2051113
-
Ser
CGA
[ENA]
¡û
>W1610734974
LMMD01000001
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
132012
131923
-
Ser
CGA
[ENA]
¡û
>W1610736398
LMNH01000002
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
192312
192401
+
Ser
CGA
[ENA]
¡û
>W1610736558
LMNK01000002
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
111697
111608
-
Ser
CGA
[ENA]
¡û
>W1610736659
LMNM01000001
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
138914
138825
-
Ser
CGA
[ENA]
¡û
>W1610737191
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
189146
189235
+
Ser
CGA
[ENA]
¡û
>W1610743017
LMSM01000008
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
535502
535413
-
Ser
CGA
[ENA]
¡û
>W1610743060
LMSN01000016
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
267954
267865
-
Ser
CGA
[ENA]
¡û
>W1610743239
LMSQ01000018
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
1102716
1102627
-
Ser
CGA
[ENA]
¡û
>W1610743404
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1913234
1913323
+
Ser
CGA
[ENA]
¡û
>W1610936291
LUNF01000163
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
3265
3176
-
Ser
CGA
[ENA]
¡û
>W1610936329
LUNG01000043
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
11544
11633
+
Ser
CGA
[ENA]
¡û
>W1610936379
LUNH01000035
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
40510
40599
+
Ser
CGA
[ENA]
¡û
>W1610936428
LUNI01000023
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
28777
28688
-
Ser
CGA
[ENA]
¡û
>W1610937810
LUPF01000018
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
36139
36050
-
Ser
CGA
[ENA]
¡û
>W1610937871
LUPH01000017
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
3509
3420
-
Ser
CGA
[ENA]
¡û
>W1610937932
LUPI01000034
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
15344
15433
+
Ser
CGA
[ENA]
¡û
>W1610937955
LUPJ01000032
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
21204
21115
-
Ser
CGA
[ENA]
¡û
>W1610938020
LUPK01000050
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
44592
44681
+
Ser
CGA
[ENA]
¡û
>W1610938044
LUPL01000026
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
7151
7062
-
Ser
CGA
[ENA]
¡û
>W1610938107
LUPM01000401
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
2009
1920
-
Ser
CGA
[ENA]
¡û
>W1710045216
BBEJ01000079
Actinomycetota
Nocardioides sp. DN36 [BBEJ]
198
288
+
Ser
CGA
[ENA]
¡û
>W1710047782
BBGV01000626
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
871
782
-
Ser
CGA
[ENA]
¡û
>W1710065871
BCRJ01000079
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
13031
13120
+
Ser
CGA
[ENA]
¡û
>W1710083206
BDJE01000028
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
130224
130137
-
Ser
CGA
[ENA]
¡û
>W1710083305
BDJG01000005
Actinomycetota
Nocardioides sp. PD653 [BDJG]
130224
130137
-
Ser
CGA
[ENA]
¡û
>W1710556304
FOKC01000013
Actinomycetota
Nocardioides alpinus [FOKC]
117610
117699
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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