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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259461 (36 seq.)
>W131169839
ARFB01000001
Bacteroidota
Segetibacter koreensis DSM 18137 [ARFB]
523291
523364
+
Lys
CTT
[ENA]
¡û
>W131237206
AUNO01000128
Bacteroidota
Chitinophaga sp. JGI 0001002-D04 [AUNO]
177
252
+
Lys
CTT
[ENA]
¡û
>W1711510314
MLAV01000105
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
19385
19310
-
Lys
CTT
[ENA]
¡û
>W1711510330
MLAV01000244
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
976
901
-
Lys
CTT
[ENA]
¡û
>WENV181308260
OFIS01001682
[OFIS] sludge metagenome; sludge
3808
3735
-
Lys
CTT
[ENA]
¡û
>WENV181402454
OFTY01001790
[OFTY] sludge metagenome; sludge
2855
2928
+
Lys
CTT
[ENA]
¡û
>WENV170662083
JXWV01194371
[JXWV] soil metagenome; rice field; organic FYM Plot
98
173
+
Lys
CTT
[ENA]
¡û
>W1911775081
QXMH01000004
Bacteroidota
Chitinophaga sp. T22 [QXMH]
488779
488706
-
Lys
CTT
[ENA]
¡û
>W1810090153
PGFG01000001
Bacteroidota
Thermoflavifilum aggregans DSM 27268 [PGFG]
1220932
1221005
+
Lys
CTT
[ENA]
¡û
>W1810586432
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
2324887
2324960
+
Lys
CTT
[ENA]
¡û
>W1810694478
QLMA01000011
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
198968
199041
+
Lys
CTT
[ENA]
¡û
>W2010106782
BKAU01000004
Bacteroidota
Chitinophaga cymbidii NBRC 109752 [BKAU]
289815
289888
+
Lys
CTT
[ENA]
¡û
>W2010213323
CABHMS010000001
Bacteroidota
Chitinophaga sp. BD 01 [CABHMS]
415090
415016
-
Lys
CTT
[ENA]
¡û
>W2010213375
CABHMT010000001
Bacteroidota
Chitinophaga sp. VP 7442 [CABHMT]
415091
415017
-
Lys
CTT
[ENA]
¡û
>W2010445821
JAABOK010000002
Bacteroidota
Chitinophaga sp. O9 [JAABOK]
122701
122628
-
Lys
CTT
[ENA]
¡û
>W2010585527
JABAIA010000001
Bacteroidota
Chitinophaga varians Ae27 [JABAIA]
1897436
1897509
+
Lys
CTT
[ENA]
¡û
>W2011328638
QXMH01000004
Bacteroidota
Chitinophaga sp. T22 [QXMH]
488779
488706
-
Lys
CTT
[ENA]
¡û
>W2011429027
RIAR02000001
Bacteroidota
Chitinophaga sp. Mgbs1 [RIAR]
4830624
4830699
+
Lys
CTT
[ENA]
¡û
>W2011458254
RPDH01000002
Bacteroidota
Chitinophaga sp. ZY74 [RPDH]
1052455
1052528
+
Lys
CTT
[ENA]
¡û
>W2011497069
RXLO01000001
Bacteroidota
Chitinophaga rhizosphaerae T16R-86 [RXLO]
143901
143827
-
Lys
CTT
[ENA]
¡û
>W2012156588
VUOC01000004
Bacteroidota
Chitinophaga sp. BN140078 [VUOC]
3147825
3147898
+
Lys
CTT
[ENA]
¡û
>W2012426536
WRXN01000017
Bacteroidota
Chitinophaga sp. ysch24 [WRXN]
6350
6275
-
Lys
CTT
[ENA]
¡û
>W2110269454
JACVFB010000005
Bacteroidota
Chitinophaga varians KACC 19415 [JACVFB]
109258
109185
-
Lys
CTT
[ENA]
¡û
>W2110269481
JACVFC010000001
Bacteroidota
Chitinophaga qingshengii JCM 30026 [JACVFC]
2853748
2853821
+
Lys
CTT
[ENA]
¡û
>W2110426524
JAELUL010000043
Bacteroidota
Chitinophaga sp. ASV3 [JAELUL]
12953
12880
-
Lys
CTT
[ENA]
¡û
>W2110546644
JAGHKP010000001
Bacteroidota
Chitinophaga chungangae MAH-28 [JAGHKP]
1476007
1475934
-
Lys
CTT
[ENA]
¡û
>W2110649240
JAHUWJ010000014
Bacteroidota
Chitinophaga sp. sic0106 [JAHUWJ]
52950
53023
+
Lys
CTT
[ENA]
¡û
>C201121014
CP043006
Bacteroidota
Chitinophaga sp. XS-30 [CP043006]
3535755
3535682
-
Lys
CTT
-
¡û
>C211325019
CP073766
Bacteroidota
Chitinophaga sp. KRA15-503 [CP073766]
6130306
6130233
-
Lys
CTT
-
¡û
>C211365506
CP079103
Bacteroidota
Chitinophaga sp. E66 [CP079103]
2182590
2182516
-
Lys
CTT
-
¡û
>W1510019443
BBWV01000001
Bacteroidota
Flavihumibacter petaseus NBRC 106054 [BBWV]
1992828
1992752
-
Lys
CTT
[ENA]
¡û
>C231156271
CP077769
Bacteroidota
Chitinophaga sp. MD30B [CP077769]
7461641
7461566
-
Lys
CTT
-
¡û
>C241149336
CP051204
Bacteroidota
Chitinophaga oryzae 1303 [CP051204]
1140407
1140334
-
Lys
CTT
-
¡û
>C241149366
CP051205
Bacteroidota
Chitinophaga oryzae 1310 [CP051205]
7494928
7494855
-
Lys
CTT
-
¡û
>WENV077922
AAFX01126363
Soil microbial communities from Minnesota Farm
142
219
+
Lys
CTT
[ENA]
>W1710601080
FUWZ01000002
Bacteroidota
Chitinophaga eiseniae [FUWZ]
481678
481753
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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