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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259491 (117 seq.)
>W131222671
AUBL01000042
Actinomycetota
Actinomyces dentalis DSM 19115 [AUBL]
24715
24640
-
Val
TAC
[ENA]
¡û
>W1711697393
MSKI01000078
Actinomycetota
Actinomyces oris [MSKI]
3800
3875
+
Val
TAC
[ENA]
¡û
>W1711697425
MSKJ01000008
Actinomycetota
Actinomyces oris [MSKJ]
58566
58491
-
Val
TAC
[ENA]
¡û
>W1711697916
MSKT01000020
Actinomycetota
Actinomyces oris [MSKT]
62817
62892
+
Val
TAC
[ENA]
¡û
>W1711697950
MSKU01000015
Actinomycetota
Actinomyces oris [MSKU]
9419
9344
-
Val
TAC
[ENA]
¡û
>W1711698132
MSKY01000004
Actinomycetota
Actinomyces naeslundii [MSKY]
324938
324863
-
Val
TAC
[ENA]
¡û
>W1711698212
MSKZ01000023
Actinomycetota
Actinomyces naeslundii [MSKZ]
8295
8370
+
Val
TAC
[ENA]
¡û
>W1711698234
MSLA01000003
Actinomycetota
Actinomyces naeslundii [MSLA]
9021
8946
-
Val
TAC
[ENA]
¡û
>W1711698322
MSLB01000034
Actinomycetota
Actinomyces naeslundii [MSLB]
42359
42284
-
Val
TAC
[ENA]
¡û
>W1711706689
MSRH01000018
Actinomycetota
Actinomyces naeslundii [MSRH]
63402
63477
+
Val
TAC
[ENA]
¡û
>W1711706745
MSRI01000023
Actinomycetota
Actinomyces naeslundii [MSRI]
30731
30656
-
Val
TAC
[ENA]
¡û
>W1711706789
MSRJ01000008
Actinomycetota
Actinomyces naeslundii [MSRJ]
29926
29851
-
Val
TAC
[ENA]
¡û
>W1711706844
MSRK01000046
Actinomycetota
Actinomyces naeslundii [MSRK]
35296
35221
-
Val
TAC
[ENA]
¡û
>W1711706880
MSRL01000020
Actinomycetota
Actinomyces naeslundii [MSRL]
89621
89696
+
Val
TAC
[ENA]
¡û
>W1711706929
MSRM01000028
Actinomycetota
Actinomyces naeslundii [MSRM]
26292
26367
+
Val
TAC
[ENA]
¡û
>W1711706956
MSRN01000001
Actinomycetota
Actinomyces naeslundii [MSRN]
104938
104863
-
Val
TAC
[ENA]
¡û
>W1711707027
MSRO01000020
Actinomycetota
Actinomyces naeslundii [MSRO]
26276
26351
+
Val
TAC
[ENA]
¡û
>W1711707055
MSRP01000002
Actinomycetota
Actinomyces naeslundii [MSRP]
61264
61339
+
Val
TAC
[ENA]
¡û
>W1711707130
MSRQ01000028
Actinomycetota
Actinomyces naeslundii [MSRQ]
60280
60355
+
Val
TAC
[ENA]
¡û
>W1711707155
MSRR01000003
Actinomycetota
Actinomyces naeslundii [MSRR]
61282
61357
+
Val
TAC
[ENA]
¡û
>W1711707215
MSRS01000012
Actinomycetota
Actinomyces naeslundii [MSRS]
72967
73042
+
Val
TAC
[ENA]
¡û
>W1711707284
MSRT01000019
Actinomycetota
Actinomyces naeslundii [MSRT]
26264
26339
+
Val
TAC
[ENA]
¡û
>W1711707323
MSRU01000018
Actinomycetota
Actinomyces naeslundii [MSRU]
21796
21721
-
Val
TAC
[ENA]
¡û
>W131221362
AUAK01000004
Actinomycetota
Actinomyces slackii ATCC 49928 [AUAK]
25930
25855
-
Val
TAC
[ENA]
¡û
>W141024121
AKGF01000030
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
36730
36657
-
Val
TAC
[ENA]
¡û
>WENV180697699
ODDE01003120
[ODDE] human metagenome; G_DNA_Supragingival plaque
239
314
+
Val
TAC
[ENA]
¡û
>WENV180721580
ODGL01002472
[ODGL] human metagenome; G_DNA_Subgingival plaque
2579
2505
-
Val
TAC
[ENA]
¡û
>WENV180721915
ODGL01030508
[ODGL] human metagenome; G_DNA_Subgingival plaque
61
134
+
Val
TAC
[ENA]
¡û
>WENV180731468
ODGW01000847
[ODGW] human metagenome; G_DNA_Supragingival plaque
993
1068
+
Val
TAC
[ENA]
¡û
>WENV180732361
ODGY01000244
[ODGY] human metagenome; G_DNA_Supragingival plaque
10044
10119
+
Val
TAC
[ENA]
¡û
>WENV180733931
ODGZ01001443
[ODGZ] human metagenome; G_DNA_Supragingival plaque
4139
4064
-
Val
TAC
[ENA]
¡û
>WENV180734435
ODGZ01008533
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2881
2806
-
Val
TAC
[ENA]
¡û
>WENV180735126
ODGZ01071079
[ODGZ] human metagenome; G_DNA_Supragingival plaque
75
1
-
Val
TAC
[ENA]
¡û
>WENV180736050
ODHB01003809
[ODHB] human metagenome; G_DNA_Supragingival plaque
2739
2814
+
Val
TAC
[ENA]
¡û
>WENV180751268
ODHS01036818
[ODHS] human metagenome; G_DNA_Supragingival plaque
983
1058
+
Val
TAC
[ENA]
¡û
>WENV180754821
ODHU01001222
[ODHU] human metagenome; G_DNA_Supragingival plaque
5961
5886
-
Val
TAC
[ENA]
¡û
>WENV180755213
ODHU01039133
[ODHU] human metagenome; G_DNA_Supragingival plaque
75
1
-
Val
TAC
[ENA]
¡û
>WENV180777509
ODIL01011999
[ODIL] human metagenome; G_DNA_Supragingival plaque
438
513
+
Val
TAC
[ENA]
¡û
>WENV180778032
ODIM01000308
[ODIM] human metagenome; G_DNA_Supragingival plaque
3778
3853
+
Val
TAC
[ENA]
¡û
>WENV180778343
ODIM01003784
[ODIM] human metagenome; G_DNA_Supragingival plaque
3437
3362
-
Val
TAC
[ENA]
¡û
>WENV180781703
ODIP01002225
[ODIP] human metagenome; G_DNA_Supragingival plaque
1792
1867
+
Val
TAC
[ENA]
¡û
>WENV180787610
ODIS01009823
[ODIS] human metagenome; G_DNA_Supragingival plaque
998
1072
+
Val
TAC
[ENA]
¡û
>WENV180788178
ODIS01036947
[ODIS] human metagenome; G_DNA_Supragingival plaque
368
293
-
Val
TAC
[ENA]
¡û
>WENV180788359
ODIS01053138
[ODIS] human metagenome; G_DNA_Supragingival plaque
75
1
-
Val
TAC
[ENA]
¡û
>WENV180788986
ODIS01177503
[ODIS] human metagenome; G_DNA_Supragingival plaque
399
326
-
Val
TAC
[ENA]
¡û
>WENV180800713
ODJD01000560
[ODJD] human metagenome; G_DNA_Supragingival plaque
9251
9326
+
Val
TAC
[ENA]
¡û
>WENV180801548
ODJD01053652
[ODJD] human metagenome; G_DNA_Supragingival plaque
81
154
+
Val
TAC
[ENA]
¡û
>WENV180805127
ODJG01067303
[ODJG] human metagenome; G_DNA_Supragingival plaque
257
182
-
Val
TAC
[ENA]
¡û
>WENV180814299
ODJO01012267
[ODJO] human metagenome; G_DNA_Supragingival plaque
1005
1080
+
Val
TAC
[ENA]
¡û
>WENV180822948
ODJW01001131
[ODJW] human metagenome; G_DNA_Supragingival plaque
1356
1431
+
Val
TAC
[ENA]
¡û
>WENV180823743
ODJW01139528
[ODJW] human metagenome; G_DNA_Supragingival plaque
79
4
-
Val
TAC
[ENA]
¡û
>WENV180833305
ODKC01027518
[ODKC] human metagenome; G_DNA_Supragingival plaque
642
717
+
Val
TAC
[ENA]
¡û
>WENV180834268
ODKD01008666
[ODKD] human metagenome; G_DNA_Supragingival plaque
274
199
-
Val
TAC
[ENA]
¡û
>WENV180847614
ODKT01119489
[ODKT] human metagenome; G_DNA_Supragingival plaque
271
344
+
Val
TAC
[ENA]
¡û
>WENV180859269
ODLD01000174
[ODLD] human metagenome; G_DNA_Supragingival plaque
40472
40397
-
Val
TAC
[ENA]
¡û
>WENV180860015
ODLD01012198
[ODLD] human metagenome; G_DNA_Supragingival plaque
1412
1487
+
Val
TAC
[ENA]
¡û
>WENV180881466
ODMA01000521
[ODMA] human metagenome; G_DNA_Supragingival plaque
6003
6078
+
Val
TAC
[ENA]
¡û
>WENV180889337
ODMN01030911
[ODMN] human metagenome; G_DNA_Supragingival plaque
625
550
-
Val
TAC
[ENA]
¡û
>WENV180891727
ODMQ01007051
[ODMQ] human metagenome; G_DNA_Supragingival plaque
130
55
-
Val
TAC
[ENA]
¡û
>WENV180922530
ODTJ01005333
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1362
1435
+
Val
TAC
[ENA]
¡û
>WENV180927766
ODTM01003486
[ODTM] human metagenome; G_DNA_Supragingival plaque
1005
1080
+
Val
TAC
[ENA]
¡û
>WENV180928228
ODTM01022790
[ODTM] human metagenome; G_DNA_Supragingival plaque
1004
1079
+
Val
TAC
[ENA]
¡û
>WENV180928499
ODTM01065815
[ODTM] human metagenome; G_DNA_Supragingival plaque
75
1
-
Val
TAC
[ENA]
¡û
>WENV180935071
ODTS01039281
[ODTS] human metagenome; G_DNA_Subgingival plaque
75
1
-
Val
TAC
[ENA]
¡û
>WENV180938505
ODTX01002503
[ODTX] human metagenome; G_DNA_Supragingival plaque
1476
1401
-
Val
TAC
[ENA]
¡û
>WENV180939551
ODTX01049810
[ODTX] human metagenome; G_DNA_Supragingival plaque
467
392
-
Val
TAC
[ENA]
¡û
>WENV180945265
ODUC01101012
[ODUC] human metagenome; G_DNA_Supragingival plaque
239
314
+
Val
TAC
[ENA]
¡û
>WENV180958345
ODUL01003204
[ODUL] human metagenome; G_DNA_Supragingival plaque
1864
1939
+
Val
TAC
[ENA]
¡û
>WENV180964413
ODUO01002156
[ODUO] human metagenome; G_DNA_Supragingival plaque
983
1058
+
Val
TAC
[ENA]
¡û
>WENV180972860
ODUW01000358
[ODUW] human metagenome; G_DNA_Supragingival plaque
16661
16586
-
Val
TAC
[ENA]
¡û
>WENV180976955
ODUY01365047
[ODUY] human metagenome; G_DNA_Supragingival plaque
201
128
-
Val
TAC
[ENA]
¡û
>WENV180983303
ODVF01007439
[ODVF] human metagenome; G_DNA_Supragingival plaque
163
236
+
Val
TAC
[ENA]
¡û
>WENV180999151
ODVT01007308
[ODVT] human metagenome; G_DNA_Buccal mucosa
506
581
+
Val
TAC
[ENA]
¡û
>WENV181004282
ODVX01212693
[ODVX] human metagenome; G_DNA_Supragingival plaque
214
139
-
Val
TAC
[ENA]
¡û
>WENV181008373
ODWE01004433
[ODWE] human metagenome; G_DNA_Supragingival plaque
2329
2404
+
Val
TAC
[ENA]
¡û
>WENV181009607
ODWE01115800
[ODWE] human metagenome; G_DNA_Supragingival plaque
75
1
-
Val
TAC
[ENA]
¡û
>WENV181012403
ODWK01000171
[ODWK] human metagenome; G_DNA_Supragingival plaque
29901
29975
+
Val
TAC
[ENA]
¡û
>WENV181020341
ODWU01130574
[ODWU] human metagenome; G_DNA_Supragingival plaque
36
111
+
Val
TAC
[ENA]
¡û
>WENV181029733
ODXF01002700
[ODXF] human metagenome; G_DNA_Supragingival plaque
4104
4029
-
Val
TAC
[ENA]
¡û
>WENV181049672
ODYD01001233
[ODYD] human metagenome; G_DNA_Supragingival plaque
3743
3818
+
Val
TAC
[ENA]
¡û
>WENV181064727
ODYP01085143
[ODYP] human metagenome; G_DNA_Supragingival plaque
100
25
-
Val
TAC
[ENA]
¡û
>WENV181077617
OEAP01091679
[OEAP] human metagenome; G_DNA_Supragingival plaque
75
1
-
Val
TAC
[ENA]
¡û
>WENV181079983
OEAS01021702
[OEAS] human metagenome; G_DNA_Supragingival plaque
2462
2388
-
Val
TAC
[ENA]
¡û
>WENV181080844
OEAS01089941
[OEAS] human metagenome; G_DNA_Supragingival plaque
439
364
-
Val
TAC
[ENA]
¡û
>WENV181146984
OEHQ01055636
[OEHQ] human metagenome; G_DNA_Supragingival plaque
75
1
-
Val
TAC
[ENA]
¡û
>WENV181152532
OEIA01002135
[OEIA] human metagenome; G_DNA_Supragingival plaque
76
1
-
Val
TAC
[ENA]
¡û
>WENV181160466
OEIK01009817
[OEIK] human metagenome; G_DNA_Supragingival plaque
2359
2284
-
Val
TAC
[ENA]
¡û
>WENV181178143
OEJS01067141
[OEJS] human metagenome; G_DNA_Supragingival plaque
186
259
+
Val
TAC
[ENA]
¡û
>WENV183509757
OMHJ01009759
[OMHJ] human oral metagenome; human oral
136
211
+
Val
TAC
[ENA]
¡û
>W09121421
ACFH01000032
Actinomycetota
Actinomyces urogenitalis DSM 15434 [ACFH]
21288
21213
-
Val
TAC
[ENA]
¡û
>C191030347
CP025227
Actinomycetota
Actinomyces wuliandei 299 [CP025227]
1639720
1639646
-
Val
TAC
-
¡û
>C191173757
CP040005
Actinomycetota
Actinomyces sp. oral taxon 171 str. F0337 [CP040005]
1725487
1725412
-
Val
TAC
-
¡û
>C191208956
LR134363
Actinomycetota
Actinomyces slackii NCTC11923 [LR134363]
2512123
2512048
-
Val
TAC
-
¡û
>W1911798509
QYRR01000001
Actinomycetota
Actinomyces sp. 2119 [QYRR]
50431
50505
+
Val
TAC
[ENA]
¡û
>W1810186588
PKHA01000001
Actinomycetota
Actinomyces urogenitalis UMB0319 [PKHA]
53913
53988
+
Val
TAC
[ENA]
¡û
>W1810191216
PKKL01000001
Actinomycetota
Actinomyces oris UMB0183 [PKKL]
16401
16476
+
Val
TAC
[ENA]
¡û
>W1810191444
PKKP01000007
Actinomycetota
Actinomyces naeslundii UMB0181 [PKKP]
60224
60299
+
Val
TAC
[ENA]
¡û
>W1810705147
QMIN01000076
Actinomycetota
Actinomyces sp. Z5 [QMIN]
66725
66652
-
Val
TAC
[ENA]
¡û
>W2010473476
JAAIJW010000018
Actinomycetota
Actinomyces sp. ZJ751 [JAAIJW]
26222
26147
-
Val
TAC
[ENA]
¡û
>W2010473514
JAAIJX010000013
Actinomycetota
Actinomyces sp. ZJ293 [JAAIJX]
23421
23496
+
Val
TAC
[ENA]
¡û
>W2010575126
JAAVTM010000015
Actinomycetota
Actinomyces sp. ZJ34 [JAAVTM]
23703
23628
-
Val
TAC
[ENA]
¡û
>W2010575149
JAAVTN010000009
Actinomycetota
Actinomyces sp. ZJ561 [JAAVTN]
274522
274447
-
Val
TAC
[ENA]
¡û
>W2011195579
PIZB01000016
Actinomycetota
Actinomyces sp. 340 [PIZB]
31877
31951
+
Val
TAC
[ENA]
¡û
>W2011343477
QYRR01000001
Actinomycetota
Actinomyces sp. 2119 [QYRR]
50431
50505
+
Val
TAC
[ENA]
¡û
>W2110190710
JABWGY010000015
Actinomycetota
Actinomyces sp. ZJ750 [JABWGY]
26222
26147
-
Val
TAC
[ENA]
¡û
>W2110281387
JACWNA010000007
Actinomycetota
Actinomyces haliotis JCM 18848 [JACWNA]
70838
70765
-
Val
TAC
[ENA]
¡û
>W10103576
ACRE01000068
Actinomycetota
Actinomyces viscosus C505 [ACRE]
5194
5269
+
Val
TAC
[ENA]
¡û
>C211176856
CP063418
Actinomycetota
Actinomyces sp. ZJ34 [CP063418]
1568007
1567932
-
Val
TAC
-
¡û
>C211185500
CP063989
Actinomycetota
Actinomyces sp. ZJ750 [CP063989]
1345178
1345253
+
Val
TAC
-
¡û
>C211221110
CP066049
Actinomycetota
Actinomyces naeslundii FDAARGOS_1037 [CP066049]
2091728
2091801
+
Val
TAC
-
¡û
>W11103784
ACRE01000068
Actinomycetota
Actinomyces viscosus C505 [ACRE]
5194
5269
+
Val
TAC
[ENA]
¡û
>W11133245
AECW01000408
Actinomycetota
Actinomyces sp. oral taxon 171 oral taxon 171 str. F0337 [AECW]
618
543
-
Val
TAC
[ENA]
¡û
>W11156677
AFBL01000003
Actinomycetota
Actinomyces sp. oral taxon 170 oral taxon 170 str. F0386 [AFBL]
68955
68880
-
Val
TAC
[ENA]
¡û
>W11174482
AFUR01000001
Actinomycetota
Actinomyces sp. oral taxon 175 oral taxon 175 str. F0384 [AFUR]
1445331
1445256
-
Val
TAC
[ENA]
¡û
>C161068923
CP014228
Actinomycetota
Actinomyces radicidentis CCUG 36733 [CP014228]
2297189
2297264
+
Val
TAC
[Ensembl]
¡û
>W121111460
ALJK01000141
Actinomycetota
Actinomyces naeslundii str. Howell 279 [ALJK]
3153
3228
+
Val
TAC
[ENA]
¡û
>W1710523230
FNHU01000006
Actinomycetota
Actinomyces ruminicola [FNHU]
192802
192875
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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