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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259539 (57 seq.)
>W1710858051
LMAS01000002
Bacillota
Bacillus sp. FJAT-29937 [LMAS]
536343
536271
-
Ala
GGC
[ENA]
¡û
>W1710859205
LMBY01000028
Bacillota
Cytobacillus dafuensis FJAT-25496 [LMBY]
8063
7989
-
Ala
GGC
[ENA]
¡û
>W1711130144
LUUO01000003
Bacillota
Cytobacillus eiseniae [LUUO]
119633
119561
-
Ala
GGC
[ENA]
¡û
>W1711336119
MBRJ01000051
Bacillota
Cytobacillus oceanisediminis [MBRJ]
15385
15313
-
Ala
GGC
[ENA]
¡û
>W1711677319
MRTL01000001
Bacillota
Paenibacillus sp. FSL H8-0259 [MRTL]
1206926
1207001
+
Ala
GGC
[ENA]
¡û
>W1711677637
MRTQ01000045
Bacillota
Paenibacillus sp. FSL R5-0490 [MRTQ]
12838
12766
-
Ala
GGC
[ENA]
¡û
>W141029058
ALEG01000067
Bacillota
Cytobacillus oceanisediminis 2691 [ALEG]
84872
84800
-
Ala
GGC
[ENA]
¡û
>W141064513
APVL01000040
Bacillota
Cytobacillus firmus DS1 [APVL]
2817
2889
+
Ala
GGC
[ENA]
¡û
>W141148435
AWXY01000201
Bacillota
Bacillus sp. 17376 [AWXY]
802
727
-
Ala
GGC
[ENA]
¡û
>W141232242
BAUW01000160
Bacillota
Mesobacillus boroniphilus JCM 21738 [BAUW]
3077
3152
+
Ala
GGC
[ENA]
¡û
>W141241526
CAHJ01000061
Bacillota
Robertmurraya massiliosenegalensis JC6 [CAHJ]
2967
3039
+
Ala
GGC
[ENA]
¡û
>W141277257
JAEL01000021
Bacillota
Bacillus sp. J33 [JAEL]
3532
3606
+
Ala
GGC
[ENA]
¡û
>WENV183729803
PJTR01000087
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
7633
7705
+
Ala
GGC
[ENA]
¢þ
>WENV170972044
MTKX01018614
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4828
4903
+
Ala
GGC
[ENA]
¢þ
>WENV170974717
MTKY01072262
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6670
6595
-
Ala
GGC
[ENA]
¢þ
>WENV170978125
MTKZ01041247
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
275
350
+
Ala
GGC
[ENA]
¢þ
>C181074368
CP022983
Bacillota
Cytobacillus kochii BDGP4 [CP022983]
3007266
3007194
-
Ala
GGC
-
¡û
>W1910340900
FTOZ01000055
Bacillota
Bacillus dakarensis Marseille-P3515 [FTOZ]
8991
8919
-
Ala
GGC
[ENA]
¡û
>W1910437961
FVZC01000008
Bacillota
Mesobacillus jeotgali Marseille-P1092 [FVZC]
1000001
999929
-
Ala
GGC
[ENA]
¡û
>W1910755755
MKZL01000059
Bacillota
Paenibacillus sp. GM1FR GM1FR [MKZL]
2915
2841
-
Ala
GGC
[ENA]
¡û
>W1910831958
MYFO01000002
Bacillota
Paenibacillus athensensis MEC069 [MYFO]
129592
129520
-
Ala
GGC
[ENA]
¡û
>W1911146522
NPDG01000049
Bacillota
Bacillus sp. 7894-2 [NPDG]
15901
15829
-
Ala
GGC
[ENA]
¡û
>W1911149838
NPGC01000071
Bacillota
Bacillus sp. 7504-2 [NPGC]
3260
3332
+
Ala
GGC
[ENA]
¡û
>W1810103852
PGUZ01000106
Bacillota
Bacillus sp. V3-13 [PGUZ]
3697
3769
+
Ala
GGC
[ENA]
¡û
>W1810103923
PGVA01000102
Bacillota
Bacillus canaveralius M4.6 [PGVA]
3693
3765
+
Ala
GGC
[ENA]
¡û
>W1810104014
PGVC01000041
Bacillota
Bacillus sp. V33-4 [PGVC]
6281
6209
-
Ala
GGC
[ENA]
¡û
>W1810104146
PGVD01000106
Bacillota
Bacillus canaveralius ATCC 29669 [PGVD]
3652
3724
+
Ala
GGC
[ENA]
¡û
>W1810149077
PISD01000036
Bacillota
Cytobacillus horneckiae 1P01SC [PISD]
2750
2822
+
Ala
GGC
[ENA]
¡û
>W1810609353
QGTW01000030
Bacillota
Cytobacillus oceanisediminis 15_TX [QGTW]
3359
3431
+
Ala
GGC
[ENA]
¡û
>W1810701675
QMFA01000001
Bacillota
Paenibacillus sp. YN15 [QMFA]
552342
552417
+
Ala
GGC
[ENA]
¡û
>W1810721759
QNSF01000015
Bacillota
Cytobacillus firmus 14_TX [QNSF]
2909
2981
+
Ala
GGC
[ENA]
¡û
>C151047542
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
2639730
2639805
+
Ala
GGC
[Ensembl]
¡û
>C151047971
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
2727784
2727859
+
Ala
GGC
[Ensembl]
¡û
>W11106735
ACWD01000016
Bacillota
Bacillus sp. 2_A_57_CT2 [ACWD]
3188
3260
+
Ala
GGC
[ENA]
¡û
>W1510650326
CVQX01000023
Bacillota
Bacillus testis SIT10 [CVQX]
3061
3136
+
Ala
GGC
[ENA]
¡û
>W1511430183
JUEI01000060
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
12653
12728
+
Ala
GGC
[ENA]
¡û
>W1511430185
JUEI01000060
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
13932
14007
+
Ala
GGC
[ENA]
¡û
>W1511430188
JUEI01000060
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
33522
33597
+
Ala
GGC
[ENA]
¡û
>W1511504881
JXIQ01000013
Bacillota
Mesobacillus subterraneus MITOT1 [JXIQ]
2712
2787
+
Ala
GGC
[ENA]
¡û
>W1511643647
LDWQ01000092
Bacillota
Cytobacillus firmus LK28 [LDWQ]
2737
2809
+
Ala
GGC
[ENA]
¡û
>W1511706464
LGUF01000007
Bacillota
Sporosarcina globispora DSM 4 [LGUF]
1443789
1443715
-
Ala
GGC
[ENA]
¡û
>C161089058
CP015506
Bacillota
Cytobacillus oceanisediminis 2691 [CP015506]
4591288
4591360
+
Ala
GGC
[Ensembl]
¡û
>W1610041420
BASE01000055
Bacillota
Mesobacillus selenatarsenatis SF-1 [BASE]
2974
3047
+
Ala
GGC
[ENA]
¡û
>W1610046642
BBCO01000160
Bacillota
Mesobacillus boroniphilus JCM 21738 [BBCO]
3077
3152
+
Ala
GGC
[ENA]
¡û
>W1610072404
BCUY01000057
Bacillota
Cytobacillus firmus NBRC 15306 [BCUY]
2718
2792
+
Ala
GGC
[ENA]
¡û
>W121010280
AGJD01000016
Bacillota
Bacillus sp. 1NLA3E [AGJD]
3275
3347
+
Ala
GGC
[ENA]
¡û
>W1610189840
FBXX01000012
Bacillota
Bacillus phocaeensis SIT16 [FBXX]
1035310
1035382
+
Ala
GGC
[ENA]
¡û
>C131015764
CP005586
Bacillota
Bacillus sp. 1NLA3E [CP005586]
3881997
3882069
+
Ala
GGC
[Ensembl]
¡û
>W1610720397
LMAS01000002
Bacillota
Bacillus sp. FJAT-29937 [LMAS]
536343
536271
-
Ala
GGC
[ENA]
¡û
>W1610721551
LMBY01000028
Bacillota
Cytobacillus dafuensis FJAT-25496 [LMBY]
8063
7989
-
Ala
GGC
[ENA]
¡û
>W1610941217
LUUO01000003
Bacillota
Cytobacillus eiseniae [LUUO]
119633
119561
-
Ala
GGC
[ENA]
¡û
>W1710038583
BASE01000055
Bacillota
Mesobacillus selenatarsenatis SF-1 [BASE]
2974
3047
+
Ala
GGC
[ENA]
¡û
>W1710043415
BBCO01000160
Bacillota
Mesobacillus boroniphilus JCM 21738 [BBCO]
3077
3152
+
Ala
GGC
[ENA]
¡û
>W1710069606
BCUY01000057
Bacillota
Cytobacillus firmus NBRC 15306 [BCUY]
2718
2792
+
Ala
GGC
[ENA]
¡û
>W1710191456
FBXX01000012
Bacillota
Bacillus phocaeensis SIT16 [FBXX]
1035310
1035382
+
Ala
GGC
[ENA]
¡û
>W1710556128
FOJZ01000006
Bacillota
Bacillus sp. UNCCL13 [FOJZ]
295844
295769
-
Ala
GGC
[ENA]
¡û
>W1710574379
FOYF01000006
Bacillota
Bacillus sp. cl95 [FOYF]
3604
3679
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK