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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259540 (33 seq.)
>W1711079159
LSNW01000005
Gammaproteobacteria
Methylothermaceae bacteria B42 [LSNW]
18370
18445
+
Phe
GAA
[ENA]
¡û
>W1711147749
LVJW01000006
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVJW]
845669
845594
-
Phe
GAA
[ENA]
¡û
>W1711147811
LVJY01000003
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVJY]
2072145
2072220
+
Phe
GAA
[ENA]
¡û
>W1711147908
LVKA01000011
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVKA]
282305
282380
+
Phe
GAA
[ENA]
¡û
>W131171467
ARGF01000060
Gammaproteobacteria
Arhodomonas aquaeolei DSM 8974 [ARGF]
393611
393536
-
Phe
GAA
[ENA]
¡û
>C000594
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
3058396
3058471
+
Phe
GAA
[Ensembl]
¡û
>WENV180583801
OCNB01222439
[OCNB] metagenome; diffuse fluid
72
147
+
Phe
GAA
[ENA]
¡û
>WENV181295307
OFHI01016089
[OFHI] soil metagenome; Clay
918
993
+
Phe
GAA
[ENA]
¡û
>WENV181413821
OGCK01144426
[OGCK] hot springs metagenome; hot spring sediment
118
193
+
Phe
GAA
[ENA]
¡û
>C08000367
CP000453
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [CP000453]
3058396
3058471
+
Phe
GAA
[Ensembl]
¡û
>WENV170154995
CEOF01389920
[CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
830
757
-
Phe
GAA
[ENA]
¡û
>WENV170668118
LADL02001139
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
934
1009
+
Phe
GAA
[ENA]
¡û
>WENV170773551
LXNJ01008105
[LXNJ] sponge metagenome; marine sponge reef
306
381
+
Phe
GAA
[ENA]
¡û
>WENV170774057
LXNJ01021215
[LXNJ] sponge metagenome; marine sponge reef
307
382
+
Phe
GAA
[ENA]
¡û
>WENV170920648
MDTG01000488
[MDTG] marine metagenome; seawater
706
631
-
Phe
GAA
[ENA]
¡û
>C181004539
AP018052
Gammaproteobacteria
Thiohalobacter thiocyanaticus FOKN1 [AP018052]
589606
589681
+
Phe
GAA
-
¡û
>W09104169
AALK01000009
Gammaproteobacteria
Alkalilimnicola ehrlichii MLHE-1 [AALK]
31077
31152
+
Phe
GAA
[ENA]
¡û
>W1911817831
QZMU01000001
Gammaproteobacteria
Thiohalobacter thiocyanaticus Hrh1 [QZMU]
1414982
1414907
-
Phe
GAA
[ENA]
¡û
>W1810898103
QUZL01000029
Gammaproteobacteria
Wenzhouxiangella sp. 15181 [QUZL]
109392
109317
-
Phe
GAA
[ENA]
¡û
>W1810913066
QVMV01000008
Gammaproteobacteria
Wenzhouxiangella sp. 15190 [QVMV]
109392
109317
-
Phe
GAA
[ENA]
¡û
>W2010679543
JACDUA010000088
Gammaproteobacteria
Ectothiorhodospiraceae bacterium WFHF3C12 [JACDUA]
11676
11751
+
Phe
GAA
[ENA]
¡û
>W2011350334
QZMU01000001
Gammaproteobacteria
Thiohalobacter thiocyanaticus Hrh1 [QZMU]
1414982
1414907
-
Phe
GAA
[ENA]
¡û
>W2011393337
RCDA01000004
Gammaproteobacteria
Alkalispirillum mobile DSM 12769 [RCDA]
152896
152821
-
Phe
GAA
[ENA]
¡û
>W2011664689
SOQX01000009
Gammaproteobacteria
Thiohalophilus thiocyanatoxydans DSM 16326 [SOQX]
42052
41977
-
Phe
GAA
[ENA]
¡û
>W2012309021
WEIF01000010
Gammaproteobacteria
Alkalilimnicola sp. S0819 [WEIF]
79465
79540
+
Phe
GAA
[ENA]
¡û
>W2012325854
WHIW01000010
Gammaproteobacteria
Alkalilimnicola sp. S0819 [WHIW]
79465
79540
+
Phe
GAA
[ENA]
¡û
>W2012400749
WNXE01000057
Gammaproteobacteria
Arhodomonas sp. KWT [WNXE]
17516
17441
-
Phe
GAA
[ENA]
¡û
>W2012400752
WNXE01000089
Gammaproteobacteria
Arhodomonas sp. KWT [WNXE]
11677
11752
+
Phe
GAA
[ENA]
¡û
>C211016785
AP024239
Gammaproteobacteria
Thiohalobacter sp. COW1 [AP024239]
2332333
2332258
-
Phe
GAA
-
¡û
>C10109802
CP001798
Gammaproteobacteria
Nitrosococcus halophilus Nc 4 [CP001798]
174905
174830
-
Phe
GAA
[Ensembl]
¡û
>WENV039998
AACY022053150
Marine microbial communities from Global Ocean Sampling (GOS)
730
807
+
Phe
GAA
[ENA]
>W1610918069
LSNW01000005
Gammaproteobacteria
Methylothermaceae bacteria B42 [LSNW]
18370
18445
+
Phe
GAA
[ENA]
¡û
>W1710508475
FMWD01000009
Gammaproteobacteria
Thiohalomonas denitrificans [FMWD]
2765
2690
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK